BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZC09RM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1778 1285 0.0
>3x_Contig1778
Length = 27694
Score = 1285 bits (648), Expect = 0.0
Identities = 726/746 (97%), Gaps = 5/746 (0%)
Strand = Plus / Minus
Query: 47 ttgttccggtattggagctgaactgaaataactgtatatgcaccagtgttctcctatcac 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16169 ttgttccggtattggagctgaactgaaataactgtatatgcaccagtgttctcctatcac 16110
Query: 107 aaggtttactggcaaggttaagtccacaaactcctcatgcttaacagtgtaaagagtctg 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16109 aaggtttactggcaaggttaagtccacaaactcctcatgcttaacagtgtaaagagtctg 16050
Query: 167 gccagtaaccgtgtcaaatatttctagtaacaaggaattctctacagaattgcccatcaa 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16049 gccagtaaccgtgtcaaatatttctagtaacaaggaattctctacagaattgcccatcaa 15990
Query: 227 atagcctccaatattaggattgaggtacttgtataatacagttctgtttcctaggattgc 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15989 atagcctccaatattaggattgaggtacttgtataatacagttctgtttcctaggattgc 15930
Query: 287 acctaaacctggaacgtggcctttatctctgacagcatgaccaacaatacgttcattccc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15929 acctaaacctggaacgtggcctttatctctgacagcatgaccaacaatacgttcattccc 15870
Query: 347 ccctacgtttctctgataggtcggtaagagggcatccccctgaagggcataccctgttac 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15869 ccctacgtttctctgataggtcggtaagagggcatccccctgaagggcataccctgttac 15810
Query: 407 tttctgctcttcaaaatggacgaaactaatattagtatttccaatgtgggaagcgttgaa 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15809 tttctgctcttcaaaatggacgaaactaatattagtatttccaatgtgggaagcgttgaa 15750
Query: 467 tatcttgaaagaactgtttttgacattaactagtttgataataggtgattcactgttcgc 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15749 tatcttgaaagaactgtttttgacattaactagtttgataataggtgattcactgttcgc 15690
Query: 527 atcaaattgaaaaccgtcgggagccttattttcgggtgtcaatccgagcgnttgctctaa 586
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 15689 atcaaattgaaaaccgtcgggagccttattttcgggtgtcaatccgagcggttgctctaa 15630
Query: 587 gagattaacagaataaatactagaacgcgttacaatcgaaagctcgttttcactcctcaa 646
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 15629 gagattaacagaataaatactagaacgcgtaacaatcgaaagctcgttttcactcctcag 15570
Query: 647 gcgcattttc-aaatgtccttcaaatttgactgcagactccacaatttcttttcaganat 705
||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 15569 gcgcaatttcaaaatgtccttcaaatttgactgcagactccacaatttctttccagagat 15510
Query: 706 gatgttccgagatgttattatttctgactttaaaaccgacgaccaagcttgttttgcaaa 765
||||| | |||||||||| ||| ||||| ||| || |||||| ||||| || ||||||||
Sbjct: 15509 gatgtccagagatgttataattcctgac-ttagaagcgacga-caagc-tgctttgcaaa 15453
Query: 766 acccaatcttacgttttagatctcgc 791
||| |||| |||| ||||||||||||
Sbjct: 15452 accaaatcgtacg-tttagatctcgc 15428
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6461
Number of Sequences: 1807
Number of extensions: 6461
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)