BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZC10FM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig871 940 0.0
3x_Contig1437 351 2e-96
>3x_Contig871
Length = 4172
Score = 940 bits (474), Expect = 0.0
Identities = 481/482 (99%), Gaps = 1/482 (0%)
Strand = Plus / Minus
Query: 87 cagaaacggcagaagcaacagaggcaacagaggcaacagaggcaacagaggcaacagagg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 cagaaacggcagaagcaacagaggcaacagaggcaacagaggcaacagaggcaacagagg 423
Query: 147 caacagaagcagcggaggcagctgagacagatgcagatgcaacggaagcctcagatgcaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 caacagaagcagcggaggcagctgagacagatgcagatgcaacggaagcctcagatgcaa 363
Query: 207 cagaagcggcagaagcagctgaggcagaagaagcggcagaagaggcagcagcggcagaag 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 cagaagcggcagaagcagctgaggcagaagaagcggcagaagaggcagcagcggcagaag 303
Query: 267 aaaccgatgccacagaagcaacagaagcagcggatgcttcagattggatagaagcctctg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 aaaccgatgccacagaagcaacagaagcagcggatgcttcagattggatagaagcctctg 243
Query: 327 aaacaacggaggcagcgaaggcagcagccgaaacttgagaagctacagaagcagcagact 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 aaacaacggaggcagcgaaggcagcagccgaaacttgagaagctacagaagcagcagact 183
Query: 387 cggaggaaattgaagacaattcctctggagagaaagaggtggtgtaaagggtgatagtag 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 cggaggaaattgaagacaattcctctggagagaaagaggtggtgtaaagggtgatagtag 123
Query: 447 aagtgtaagtcgtggtaacttcaccttcaccgtcagcattgaccaaagcggcggctgaga 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 aagtgtaagtcgtggtaacttcaccttcaccgtcagcattgaccaaagcggcggctgaga 63
Query: 507 tcaaagttggcacaataactttcttgaattgcattttattatttccaatcagtggcttta 566
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 62 tcaaagttggcacaataactttcttgaattgcattttattatttccaatcag-ggcttta 4
Query: 567 at 568
||
Sbjct: 3 at 2
>3x_Contig1437
Length = 8480
Score = 351 bits (177), Expect = 2e-96
Identities = 219/229 (95%), Gaps = 3/229 (1%)
Strand = Plus / Plus
Query: 592 atcttgaacgatgtcacgactcttgatgaatgaatcttaattctttttttaacgagagta 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atcttgaacgatgtcacgactcttgatgaatgaatcttaattctttttttaacgagagta 60
Query: 652 aaggttttaatat-atattgaggctactgcaacttatttcaacggaaagggagtttggag 710
||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 61 aaggttttaatataatattgaggctactgcaacttatttcaacggaaatggagtttggag 120
Query: 711 tagtatattatagttattcttaaatttgcaaacaaagctttattattttaggccttcaac 770
||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 121 tagtatattatag-tattcttaaatttgcaaacaaagctttattattttatggcttcaac 179
Query: 771 aaaaataatttgggttttgttttaagggaac-actgggggggaattttg 818
||| ||||||||||||||||||||| ||||| |||||||| || |||||
Sbjct: 180 aaagataatttgggttttgttttaaaggaacgactgggggtgagttttg 228
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7254
Number of Sequences: 1807
Number of extensions: 7254
Number of successful extensions: 76
Number of sequences better than 1.0e-20: 2
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)