BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZC11RM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1794 997 0.0
>3x_Contig1794
Length = 36744
Score = 997 bits (503), Expect = 0.0
Identities = 562/579 (97%), Gaps = 2/579 (0%)
Strand = Plus / Plus
Query: 44 gcttcgccatttttgtagctcttttctcttcttcaaagatctccatttcgttagcttcc- 102
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 29676 gcttcgccatttttgtagctctttcctcttcttcaaagatctccatttcgttagcttcca 29735
Query: 103 tatcgtcgtcatcatctgaatcaaagtatttccttttactacctttgttgaagatagacc 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29736 tatcgtcgtcatcatctgaatcaaagtatttccttttactacctttgttgaagatagacc 29795
Query: 163 aaatttcatctctatcgtacggttgtgatttggagccttgttcacactcgtctatttttt 222
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 29796 aaatttcatctctatcgtacggttgtgatttggagccttgttcacactcgtctaaatcat 29855
Query: 223 catcttcaataaagtctgagagatcttcgtcattctcactgtcataatgttgatctccgt 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29856 catcttcaataaagtctgagagatcttcgtcattctcactgtcataatgttgatctccgt 29915
Query: 283 gtcttgccataatttgtttcttttctttaagttttaacttcttcgcaagcttttcgtttg 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29916 gtcttgccataatttgtttcttttctttaagttttaacttcttcgcaagcttttcgtttg 29975
Query: 343 gttgtgcaaaacggttgaaagactttaccatcactttcgacttcggttcttttacaggtt 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29976 gttgtgcaaaacggttgaaagactttaccatcactttcgacttcggttcttttacaggtt 30035
Query: 403 tagcatctttcgttgccgcctttggtttagcggctttatcaaatccgagtttcttcggga 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30036 tagcatctttcgttgccgcctttggtttagcggctttatcaaatccgagtttcttcggga 30095
Query: 463 gcggcttcttgccttcctttggtcctttcctagacttctgctctgctcgcttcatttatt 522
||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 30096 gcggcttcttgtcttcctttggtccttccctagacttctgctctgctcgcttcattaatt 30155
Query: 523 catcaaaccatagttttttgattggctcccttttcggtaccacgacaggattcttttccg 582
|||||||| ||||||| |||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 30156 catcaaacgatagtttcttgattggctcccttttcggtaccacgacaggatac-tttccg 30214
Query: 583 ttgggggtattgacaccaggttttttcttattaattgga 621
| | |||||||||||||||||||||||||| |||||||
Sbjct: 30215 cttgtggtattgacaccaggttttttcttataaattgga 30253
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,626
Number of Sequences: 1807
Number of extensions: 11626
Number of successful extensions: 114
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)