BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZC12FM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig405 1447 0.0
>3x_Contig405
Length = 1753
Score = 1447 bits (730), Expect = 0.0
Identities = 790/808 (97%), Gaps = 2/808 (0%)
Strand = Plus / Plus
Query: 86 agtgagtggggtattgaggctttgaaggacacttcgccgactgttgtaggccaagatcgc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 agtgagtggggtattgaggctttgaaggacacttcgccgactgttgtaggccaagatcgc 351
Query: 146 tttgaatcacaggagattctgattttttacgattacagaactgattttctgaactcacat 205
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 352 tttgaatcacaggagattctgattgataacgattacagaactgattttctgaactcacat 411
Query: 206 gaagaagatagcctanggagtaaacaagtagatttgatcatgaagcagctaccttatggt 265
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gaagaagatagccgatggagtaaacaagtagatttgatcatgaagcagctaccttatggt 471
Query: 266 gacctggatgcctttgttgatgaatttcactatgaaatcatttcctcgcaactgttaaca 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gacctggatgcctttgttgatgaatttcactatgaaatcatttcctcgcaactgttaaca 531
Query: 326 agctcgatcgcttctcatcaccagttatttactgttcagaaatcaatcctgaacttcaat 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 agctcgatcgcttctcatcaccagttatttactgttcagaaatcaatcctgaacttcaat 591
Query: 386 aaggaaaacaccctatcgattcacaacgctgaaggaaagactatacctacaaaatatgga 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 aaggaaaacaccctatcgattcacaacgctgaaggaaagactatacctacaaaatatgga 651
Query: 446 caattgttaatttctggaaaaaaattctatttacagagaacaattccatacatgttcacc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 caattgttaatttctggaaaaaaattctatttacagagaacaattccatacatgttcacc 711
Query: 506 atattgacggcaagaaaagctttccgtaaaatgctttataagagacatctacctagatcc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 atattgacggcaagaaaagctttccgtaaaatgctttataagagacatctacctagatcc 771
Query: 566 tctctgatgtccttattgatgattgctgtttatctagctttacagcaagagtacttccat 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 tctctgatgtccttattgatgattgctgtttatctagctttacagcaagagtacttccat 831
Query: 626 gcaaaatattccaaatacactgcccttttaaatctacgacagatgaatgctgcattgcaa 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 gcaaaatattccaaatacactgcccttttaaatctacgacagatgaatgctgcattgcaa 891
Query: 686 tctgtagacaaattaatctatcgttatcacctgacttantaagagctgactatttacaaa 745
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 892 tctgtagacaaattaatctatcgttatcacctgacttataaagagctgactatttacaaa 951
Query: 746 ccaatcgcattgactgaaaatcgtggtctacgttcagatgaagccagaacactgacatta 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952 ccaatcgcattgactgaaaatcgtggtctacgttcagatgaagccagaacactgacatta 1011
Query: 806 ctaacagatgtccttacatgtacaagtgaccagtttattcacaaattggacacttgaatc 865
|||||||||||||||||||||||| |||||||| ||||||||||| ||| ||| |||
Sbjct: 1012 ctaacagatgtccttacatgtacagtagaccagttatttcacaaattgaaca-ttgcatc 1070
Query: 866 tagtaccattttgcccggttgggaatgc 893
||||| ||||||| ||||||| ||||||
Sbjct: 1071 tagtaacattttg-ccggttgtgaatgc 1097
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5858
Number of Sequences: 1807
Number of extensions: 5858
Number of successful extensions: 27
Number of sequences better than 1.0e-20: 1
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)