BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZC12RM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1307 1096 0.0
>3x_Contig1307
Length = 7280
Score = 1096 bits (553), Expect = 0.0
Identities = 601/613 (98%), Gaps = 3/613 (0%)
Strand = Plus / Minus
Query: 51 gctttacctgagggaattgcctgtgtccttgtt-acaaacgagaagttaccagatttcat 109
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 6149 gctttacctgagggaattgcctgagtccttgttcacaaacgagaagttaccagatttcat 6090
Query: 110 ccagcttgttgaacaatttcagacggaccagattacggaagaggcttttgacgagttggt 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6089 ccagcttgttgaacaatttcagacggaccagattacggaagaggcttttgacgagttggt 6030
Query: 170 caggcagaagcttagaactttaccaatatacaattaccacatgataaagaggatttttca 229
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 6029 caggcagaagcttagaactttaccaatatacaattaccacatgataaagaggatcttcca 5970
Query: 230 gcatctacacagagttcataatcatatggataccaaccgtatggatgctagcaatcttgc 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5969 gcatctacacagagttcataatcatatggataccaaccgtatggatgctagcaatcttgc 5910
Query: 290 tattgttttctcaatgagtttcatcaatcaagatgatctggctaacagtatgggaccaag 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5909 tattgttttctcaatgagtttcatcaatcaagatgatctggctaacagtatgggaccaag 5850
Query: 350 tttaggtttattgcagagcctactgcaaaagttcataagatatccagatacctatttcgt 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5849 tttaggtttattgcagagcctactgcaaaagttcataagatatccagatacctatttcgt 5790
Query: 410 ctatgaatagactataataatatataataactactgcgtaatatataataacattgttta 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5789 ctatgaatagactataataatatataataactactgcgtaatatataataacattgttta 5730
Query: 470 tttacatgataaattcgagatttagtgacaacaatcaggtgtgtgaaaagatctctacaa 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5729 tttacatgataaattcgagatttagtgacaacaatcaggtgtgtgaaaagatctctacaa 5670
Query: 530 aggtacttctggtgattatttcttgcgaacaatttttattctttggttttctttttcttt 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5669 aggtacttctggtgattatttcttgcgaacaatttttattctttggttttctttttcttt 5610
Query: 590 ttt-gccaaattcttcattttatcatcttggtctttcattataactctcttttcagcttt 648
||| ||||||| |||||||||||||||||| |||||||| ||| ||||||| ||||| ||
Sbjct: 5609 tttggccaaatccttcattttatcatcttgttctttcatcatagctctcttctcagc-tt 5551
Query: 649 ggtcttttgcttt 661
||||||| |||||
Sbjct: 5550 ggtctttcgcttt 5538
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,420
Number of Sequences: 1807
Number of extensions: 10420
Number of successful extensions: 125
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)