BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC28ZD01FM1.SCF screened BAC_end (944 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1263 1300 0.0 >3x_Contig1263 Length = 6840 Score = 1300 bits (656), Expect = 0.0 Identities = 714/727 (98%), Gaps = 5/727 (0%) Strand = Plus / Minus Query: 86 tgccgcaacacaagcccttacacaagcagcctctgaataatacccaaatgctgaaagatg 145 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2033 tgccgcaacacaagcccttacacaagcagcctctgaataatacccaaatgctgaaagatg 1974 Query: 146 aggtcgaaccgctatcagaattgaaaaccaatgataataataaaggccctcaagcggaga 205 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1973 aggtcgaaccgctatcagaattgaaaaccaatgataataataaaggccctcaagcggaga 1914 Query: 206 ggctgcaacaaatctttccaatacgtcaggctaccattggaagacgtaggccgcctccac 265 |||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1913 ggctgcaacaaaacataccaatacgtcaggctaccattggaagacgtaggccgcctccac 1854 Query: 266 cggtagatataagtaattttaggagacctctaaaatcagaaccatctgtttccactgtta 325 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1853 cggtagatataagtaattttaggagacctctaaaatcagaaccatctgtttccactgtta 1794 Query: 326 catctactggtatggaaaccggaacgatatcctctacatcacctgcggaagtaaaatctg 385 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1793 catctactggtatggaaaccggaacgatatcctctacatcacctgcggaagtaaaatctg 1734 Query: 386 gtaaatcaccgcagcagtcattcacaactccgcaagtaagagacctggaacaacaaatgg 445 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1733 gtaaatcaccgcagcagtcattcacaactccgcaagtaagagacctggaacaacaaatgg 1674 Query: 446 atgaacagaactttcagcccggccatcagcgtcaaagatcagaggttgaacaactggtgg 505 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1673 atgaacagaactttcagcccggccatcagcgtcaaagatcagaggttgaacaactggtgg 1614 Query: 506 atcatttggatgattttatcaaccaatccagcgctgacgttgagaatactcctggttact 565 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1613 atcatttggatgattttatcaaccaatccagcgctgacgttgagaatactcctggttact 1554 Query: 566 cggatggaggggaaatacctcttagacaactagacacanaagttgatactgttagtgatg 625 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 1553 cggatggaggggaaatacctcttagacaactagacacaaaagttgatactgttagtgatg 1494 Query: 626 ctgagagcgccaag-atataacacctttgtatgggagatctgaagcca-cgaagatatca 683 |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 1493 ctgagagcgccaagaatataacacctttgtatgggagatctgaagccaccgaagatatca 1434 Query: 684 gtgaatccgatgtttactattctgatggtgaaccgtccatggatgaaatgttttccttca 743 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1433 gtgaatccgatgttaactattctgatggtgaaccgtccatggatgaaatgttttccttca 1374 Query: 744 acgagtccattaacaaaaaagaatgcaattaccgatcttcaaacaaagcactggccgcct 803 |||||||||||||| ||||||||||| |||||||||| || ||||||||||| ||||||| Sbjct: 1373 acgagtccattaac-aaaaagaatgcgattaccgatc-tccaacaaagcact-gccgcct 1317 Query: 804 tatcttt 810 |||||| Sbjct: 1316 catcttt 1310 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6597 Number of Sequences: 1807 Number of extensions: 6597 Number of successful extensions: 43 Number of sequences better than 1.0e-20: 1 length of query: 944 length of database: 10,358,551 effective HSP length: 16 effective length of query: 928 effective length of database: 10,329,639 effective search space: 9585904992 effective search space used: 9585904992 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)