BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC28ZD01RM1.SCF screened BAC_end
         (929 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1576                                                        1396   0.0  

>3x_Contig1576 
          Length = 13648

 Score = 1396 bits (704), Expect = 0.0
 Identities = 765/780 (98%), Gaps = 4/780 (0%)
 Strand = Plus / Minus

                                                                        
Query: 43   gcttgtaaaaaccttaactaca-catgccaacgccaatccaatcaaaggctattcctccc 101
            |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 6170 gcttgtaaaaaccttaactacaacaagccaacgccaatccaatcaaaggctattcctccc 6111

                                                                        
Query: 102  gctttgaaaggtagtgatatcattgggttagcccaaacaggttccggtaaaacagcggca 161
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6110 gctttgaaaggtagtgatatcattgggttagcccaaacaggttccggtaaaacagcggca 6051

                                                                        
Query: 162  tttgcaattcctatcttgaaccaactatggcacgatcaacaaccttattatgcgtgtatt 221
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6050 tttgcaattcctatcttgaaccaactatggcacgatcaacaaccttattatgcgtgtatt 5991

                                                                        
Query: 222  ttggctcctactagagaattagcgcaacagattaaggagacgtttgattctttaggatct 281
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5990 ttggctcctactagagaattagcgcaacagattaaggagacgtttgattctttaggatct 5931

                                                                        
Query: 282  cttatgggtgttagatcaacttgtattgttggtggtatgagtatgatggaccaagctcgt 341
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5930 cttatgggtgttagatcaacttgtattgttggtggtatgagtatgatggaccaagctcgt 5871

                                                                        
Query: 342  gatttaatgcggaagccacacatcataattgccacacctggtagattaatggaccatctg 401
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5870 gatttaatgcggaagccacacatcataattgccacacctggtagattaatggaccatctg 5811

                                                                        
Query: 402  gaaaatactaaaggtttcaatttacgtaaattgaagtaccttgttatggatgaagctgat 461
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5810 gaaaatactaaaggtttcaatttacgtaaattgaagtaccttgttatggatgaagctgat 5751

                                                                        
Query: 462  agattattagacatggaattcggacctgtgctagaccgtatcttgaatatcattcctaca 521
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5750 agattattagacatggaattcggacctgtgctagaccgtatcttgaatatcattcctaca 5691

                                                                        
Query: 522  caaggtagaactacatatttgttctctgcaacaatgacttcgaagattgataaacttcaa 581
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5690 caaggtagaactacatatttgttctctgcaacaatgacttcgaagattgataaacttcaa 5631

                                                                        
Query: 582  agagcatcacttacgaatccagttaaatgtgcagtatccaacaaataccaaacagtggac 641
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5630 agagcatcacttacgaatccagttaaatgtgcagtatccaacaaataccaaacagtggac 5571

                                                                        
Query: 642  actttagtccaaactttgatgggtggtccctggagggttgaagaacacttttttgatata 701
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 5570 actttagtccaaactttgat-ggtggtccctggagggttgaagaacacttttttgatata 5512

                                                                        
Query: 702  tcttttggaagaatttattgggaattcaaccatcgggtttactaaaactaaggc-aacgc 760
            ||||||| | |||||||||||||| |||||||||| |||||||| ||||||||| |||||
Sbjct: 5511 tcttttgaatgaatttattgggaagtcaaccatcgtgtttactagaactaaggcaaacgc 5452

                                                                        
Query: 761  tgagagaatttctaacctttgcaatctattgggatttaatgcgacgggctttacatgggg 820
            ||||||||| |||||||| ||||||||||||| ||||| |||||| ||| ||||||||||
Sbjct: 5451 tgagagaatatctaacctctgcaatctattggaatttagtgcgac-ggcattacatgggg 5393


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6635
Number of Sequences: 1807
Number of extensions: 6635
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)