BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZD02FM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig558 1195 0.0
>3x_Contig558
Length = 2126
Score = 1195 bits (603), Expect = 0.0
Identities = 680/699 (97%), Gaps = 5/699 (0%)
Strand = Plus / Plus
Query: 86 caactagaataagtttcctctgaaaatgaaccgtggtcaaaaaaaaatcattcggctgga 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 caactagaataagtttcctctgaaaatgaaccgtggtcaaaaaaaaatcattcggctgga 616
Query: 146 aagctgtattgtggccaatttgagcataaaatatgaaccaaatgtccatgtacataactg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 aagctgtattgtggccaatttgagcataaaatatgaaccaaatgtccatgtacataactg 676
Query: 206 tatactaatcatcaataaacataggtacacctacctcatgcgcccaacaagcggagtttt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tatactaatcatcaataaacataggtacacctacctcatgcgcccaacaagcggagtttt 736
Query: 266 atctaaccagactcaaaggccaaagaatagataagtcacgtgtgttacccgaacactgaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 atctaaccagactcaaaggccaaagaatagataagtcacgtgtgttacccgaacactgaa 796
Query: 326 cgtgcacaatgacaacactatcgcgtggcctgggaaaattttgaaaatagtgagttttcg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 cgtgcacaatgacaacactatcgcgtggcctgggaaaattttgaaaatagtgagttttcg 856
Query: 386 gaaaaccaagagaattgaaacgactggatcgcaattgtcatcgctattcaatatcctatt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 gaaaaccaagagaattgaaacgactggatcgcaattgtcatcgctattcaatatcctatt 916
Query: 446 ggattcttcagctcatatttgcacaagggtaagacaacttctgtggaaatctgttggcaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 917 ggattcttcagctcatatttgcacaagggtaagacaacttctgtggaaatctgttggcaa 976
Query: 506 gagtctagttcgtgtaaagttcaaggccctttccgttattactaaggagattagcaagaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 977 gagtctagttcgtgtaaagttcaaggccctttccgttattactaaggagattagcaagaa 1036
Query: 566 gcgagaagat-caaagatactcaacgatgactgatgttgcggccgacttatgattcgatc 624
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1037 gcgagaagatacaaagatactcaacgatgactgatgttgcggccgacttaggattcgatc 1096
Query: 625 caacgatgaagaagaag-agagcaagaaggtgtttccggaagaactgattgctgcttcca 683
||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1097 caacgatgaagaagaagaagagcaagaaggtagttccggaagaactgattgctgcttcca 1156
Query: 684 ccgagggaacagatgatcttttttgctggtttgaagtagtatgaagatgaagatctggga 743
|||||||||||||||||| ||||||||||||||||| || | ||||| ||||| | |||
Sbjct: 1157 ccgagggaacagatgatc-tttttgctggtttgaagaag-aagaagaagaagagcaagga 1214
Query: 744 aagttgagaaaccactggaaagcaagtgggacgacattt 782
| || ||||||||||| |||||||| |||||||||||
Sbjct: 1215 aggtgaagaaaccactgagaagcaagt-ggacgacattt 1252
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8848
Number of Sequences: 1807
Number of extensions: 8848
Number of successful extensions: 84
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)