BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZD02RM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig390 1209 0.0
>3x_Contig390
Length = 1860
Score = 1209 bits (610), Expect = 0.0
Identities = 662/677 (97%), Gaps = 2/677 (0%)
Strand = Plus / Minus
Query: 44 gctttacgggagcgaatttatcgatcactcgtacatgtaccatctcacgagaacagacca 103
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1661 gctttacgggagcgaatttatcgaacactcgtacatgtaccatctcacgagaacagacca 1602
Query: 104 cagacacaatttttcgatttggaacctggtcttactcttagaatctgctggtattcatct 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1601 cagacacaatttttcgatttggaacctggtcttactcttagaatctgctggtattcatct 1542
Query: 164 ttcccaatctatcgaactatctaagctggcattcgttcctcaattgacactatgtgcagt 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1541 ttcccaatctatcgaactatctaagctggcattcgttcctcaattgacactatgtgcagt 1482
Query: 224 actaccttatctattgtggaaatcacagacgttcgaaaatttaatgaatgtcctattcgt 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1481 actaccttatctattgtggaaatcacagacgttcgaaaatttaatgaatgtcctattcgt 1422
Query: 284 acaaacatacgcattcgttactttcaataaagtatgcacttctcaatatttcatttggta 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1421 acaaacatacgcattcgttactttcaataaagtatgcacttctcaatatttcatttggta 1362
Query: 344 tttggtattatccccattttatttcgcaaatacaaccattacatggagaaaaggtgtggt 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1361 tttggtattatccccattttatttcgcaaatacaaccattacatggagaaaaggtgtggt 1302
Query: 404 ctgtatatttttatggatattgtctcaagccgtatggctttcacaagcatatctacttga 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1301 ctgtatatttttatggatattgtctcaagccgtatggctttcacaagcatatctacttga 1242
Query: 464 attcaaaggccaaaatgtatttttccccaacttattctttggcaatatagtgtntttcct 523
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1241 attcaaaggccaaaatgtatttttccccaacttattctttggcaatatagtgtttttcct 1182
Query: 524 catcaacgtctatctacctcgtgtctttatcactgacatcaaatccagaacgtcattcca 583
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1181 catcaacgtctatctactcggtgtctttatcactgacatcaaatccagaacgtcattcca 1122
Query: 584 agacaatcaacataagaagaatttttaattttaacttagcatatactgtagcgtactgtg 643
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 1121 agacaatcaacataagaagaatatataattttaacttagcatatactgtagcgtactgtg 1062
Query: 644 acattttc-aagccacgatcgaagtcctgacgagtattttgatggtcc-ttcccgtcatt 701
|||||||| ||||||||||||||||||||||||||||||||||| ||| |||| ||||
Sbjct: 1061 acattttcaaagccacgatcgaagtcctgacgagtattttgatgttccattccgttcatc 1002
Query: 702 ccatttcttatccgttg 718
| ||||| |||||||||
Sbjct: 1001 caatttcatatccgttg 985
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,632
Number of Sequences: 1807
Number of extensions: 14632
Number of successful extensions: 150
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)