BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZD04FM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1711 1027 0.0
>3x_Contig1711
Length = 15491
Score = 1027 bits (518), Expect = 0.0
Identities = 599/618 (96%), Gaps = 6/618 (0%)
Strand = Plus / Minus
Query: 87 aatatttgtttatgtaaataaggttagaatagaatcatacgtcactttgcgaagactgtc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7020 aatatttgtttatgtaaataaggttagaatagaatcatacgtcactttgcgaagactgtc 6961
Query: 147 tacgttttttacctttgatcattagatacacgattccagcgatcgtagcacagtcacaga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6960 tacgttttttacctttgatcattagatacacgattccagcgatcgtagcacagtcacaga 6901
Query: 207 atgcaagaccagtgaaacaccatccagcccccattgcctcgattaatttgaaaactattg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6900 atgcaagaccagtgaaacaccatccagcccccattgcctcgattaatttgaaaactattg 6841
Query: 267 ctgatgctactgctgcggctgcgtttctgaaaaaactactgatagaaaccagggttgctg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6840 ctgatgctactgctgcggctgcgtttctgaaaaaactactgatagaaaccagggttgctg 6781
Query: 327 tctttttcctatccagttctgtcaaaaatgtcatcgtagcatttgagcaccacgtcatac 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6780 tctttttcctatccagttctgtcaaaaatgtcatcgtagcatttgagcaccacgtcatac 6721
Query: 387 cgaatgccaacaagaaagaaaaaaccaatataacgactatatgtagttccttttcaatgg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6720 cgaatgccaacaagaaagaaaaaaccaatataacgactatatgtagttccttttcaatgg 6661
Query: 447 cccagccaaaaccgcagcaaccggccatgctaatcgctagaccccaaatttgaaaccaga 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6660 cccagccaaaaccgcagcaaccggccatgctaatcgctagaccccaaatttgaaaccaga 6601
Query: 507 gcctatactctggaatccatttctttgattttgccttg-aaaaatctgataggtgacctt 565
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 6600 gcctatactctggaatccatttctttgattttgccttgaaaaaatctgataggtgacctc 6541
Query: 566 cactttatg-accacatagtaatccaata-caggacacacgttacaagcaccaattggga 623
||||| ||| ||||||||||||||||||| |||||||||||| ||||||||||||| |||
Sbjct: 6540 cacttaatgaaccacatagtaatccaataccaggacacacgtaacaagcaccaatttgga 6481
Query: 624 agttggttgaaa-cgaattttgaatggagctcatgcgataaaa-aacacttgaacattgt 681
||| ||||||| ||||| | |||||||||||||||||||||| |||||| |||| |
Sbjct: 6480 ggtt-gttgaaaccgaatctcgaatggagctcatgcgataaaataacactgaaacagtag 6422
Query: 682 tttgaggagaataggatt 699
| ||||||||||||||||
Sbjct: 6421 tatgaggagaataggatt 6404
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7656
Number of Sequences: 1807
Number of extensions: 7656
Number of successful extensions: 90
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)