BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZD04RM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1806 1255 0.0
>3x_Contig1806
Length = 53694
Score = 1255 bits (633), Expect = 0.0
Identities = 750/784 (95%), Gaps = 4/784 (0%)
Strand = Plus / Minus
Query: 45 cttcggtaaatccaattggtgatagggtattcacagaattgtgttactcaaaaaatcgct 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36273 cttcggtaaatccaattggtgatagggtattcacagaattgtgttactcaaaaaatcgct 36214
Query: 105 gtgagcaataaagtatgtgtttggtattttcaattatgcccaatcgaccacctataagag 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36213 gtgagcaataaagtatgtgtttggtattttcaattatgcccaatcgaccacctataagag 36154
Query: 165 taatattacccatcactaattactacagcggcttcccggtattattattaggtactgatt 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36153 taatattacccatcactaattactacagcggcttcccggtattattattaggtactgatt 36094
Query: 225 tacttctcaaaatatgggaagtgaaattctatcactgggtttaatcgtatttgaaaaata 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36093 tacttctcaaaatatgggaagtgaaattctatcactgggtttaatcgtatttgaaaaata 36034
Query: 285 tcatccgctccagtagaaccctttgccaatgtttattgtactattggtgatatataaacg 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36033 tcatccgctccagtagaaccctttgccaatgtttattgtactattggtgatatataaacg 35974
Query: 345 ttaattgaattgaagatcttatatgcattcattaaaagagacaccatttacttcctgtta 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35973 ttaattgaattgaagatcttatatgcattcattaaaagagacaccatttacttcctgtta 35914
Query: 405 attttgagtagtaaatttttgttttcgttcattcattcacttttctgtgcaattcatccc 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35913 attttgagtagtaaatttttgttttcgttcattcattcacttttctgtgcaattcatccc 35854
Query: 465 ttcatcgcccaactcctgtcctgcaactctgtcggtacggaatattcccatacattaatt 524
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 35853 ttcatcgcccaactcctgtcctgcaactctgtcggtacggaatatccccatacattaatt 35794
Query: 525 aaatgagattagaatactattttgcgttggtcgcaactctatggcctactactgtctatg 584
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 35793 aaatgagattagaatactattttgcgttggtcgcaactctatggctaactactgtctatg 35734
Query: 585 cagcttctgaaaaatttcgtcttaagcttactggaccaaacgaatt-aaagggatgatgn 643
|||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 35733 cagcttctgaaaaattcggtcttaagcttactggaccaaacgaattaaaaggaatgatga 35674
Query: 644 attatgaagaacggagctcgctttttatttgtaaacatttcggggatattatag-aggt- 701
||||||||| | ||||||||||||||| ||||||||| ||| ||||| |||| ||||
Sbjct: 35673 tttatgaagacggaagctcgctttttattggtaaacattccggtgatatcatagaaggta 35614
Query: 702 caattcaggaggatgggtccctgaaaatgggccctggagagttctttgggataaacaaga 761
||||||| |||||||||||| ||||| ||||| ||||||||||| |||||||||||||||
Sbjct: 35613 caattcaagaggatgggtccttgaaattgggcactggagagttcattgggataaacaaga 35554
Query: 762 cctttttaacttt-accactaactattccccataccctaccccttttgctttcaaggggg 820
|| | ||||||| |||||||||||| ||| |||| |||| || |||||| |||| ||||
Sbjct: 35553 actatctaactttaaccactaactatacccaatacgctacgccatttgctatcaatgggg 35494
Query: 821 atgg 824
||||
Sbjct: 35493 atgg 35490
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7015
Number of Sequences: 1807
Number of extensions: 7015
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)