BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZD05FM1.SCF screened BAC_end
(960 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1794 1215 0.0
>3x_Contig1794
Length = 36744
Score = 1215 bits (613), Expect = 0.0
Identities = 687/703 (97%), Gaps = 8/703 (1%)
Strand = Plus / Minus
Query: 85 acacaacacaacgacgaatacatttcatgatttagcctaaagacccttttttgttgctcc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7666 acacaacacaacgacgaatacatttcatgatttagcctaaagacccttttttgttgctcc 7607
Query: 145 ggtcattgtcctttctttcc-tacaatactgtagtgtgaacgtacgaataagactgggaa 203
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 7606 ggtcattgtcctttctttccatacaatactgtagtgtgaacgtacgaataagactgggaa 7547
Query: 204 ctattgagaattaacctaaaacgactattactaaaatatacaacgaattaaaacccagcg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7546 ctattgagaattaacctaaaacgactattactaaaatatacaacgaattaaaacccagcg 7487
Query: 264 aattaaaagaaatcagaagaaataaatacgataaaacctaaaaattctaaatgatatgga 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7486 aattaaaagaaatcagaagaaataaatacgataaaacctaaaaattctaaatgatatgga 7427
Query: 324 ggttgatacaagtgatgtctcgattccgtttcaaaagggggttctagtctttgttttaat 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7426 ggttgatacaagtgatgtctcgattccgtttcaaaagggggttctagtctttgttttaat 7367
Query: 384 gaccaacaaacataaatctttcttcaatatactattccttcctttctaacaatatcaaag 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7366 gaccaacaaacataaatctttcttcaatatactattccttcctttctaacaatatcaaag 7307
Query: 444 aaaacactggatcgattataatttgtctatccccgttaaaaatattatcaattaagaacc 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7306 aaaacactggatcgattataatttgtctatccccgttaaaaatattatcaattaagaacc 7247
Query: 504 gaattgaaagacttagattttatattttttagcagaaacgatttgtgtgtaactgatgtc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7246 gaattgaaagacttagattttatattttttagcagaaacgatttgtgtgtaactgatgtc 7187
Query: 564 tagttttaagattcatattcatatataccgattaaactgactgcgcatactgagagagat 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7186 tagttttaagattcatattcatatataccgattaaactgactgcgcatactgagagagat 7127
Query: 624 gatctgtttttggcatcaacaagagttagaaaggcagggtattaaatgggtattaaggtc 683
|||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 7126 gatctggttttggcatcaacaagagttagaaaggcagggtaataaatgggta-taaggtc 7068
Query: 684 ctcacttgttacccgggtttttttaccacgaaatccaaattttttccggcgggaaaattt 743
|||||||||||||| || |||| |||||||||||| ||| |||||||||||||||| |
Sbjct: 7067 ctcacttgttaccc-ggattttataccacgaaatcgaaa-tttttccggcgggaaa--tc 7012
Query: 744 tnttgaaggtccaagaaaaagacatttgttttcccccaaaaat 786
| ||| |||||| ||||||||||| ||||||||||||||||||
Sbjct: 7011 ttttg-aggtcccagaaaaagaca-ttgttttcccccaaaaat 6971
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9409
Number of Sequences: 1807
Number of extensions: 9409
Number of successful extensions: 74
Number of sequences better than 1.0e-20: 1
length of query: 960
length of database: 10,358,551
effective HSP length: 16
effective length of query: 944
effective length of database: 10,329,639
effective search space: 9751179216
effective search space used: 9751179216
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)