BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZD06FM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig463 1304 0.0
>3x_Contig463
Length = 2578
Score = 1304 bits (658), Expect = 0.0
Identities = 765/794 (96%), Gaps = 5/794 (0%)
Strand = Plus / Plus
Query: 88 aaggttacttaatagttcaaccgtcaggaataagttaaatgttttgaatcctgaggggtt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 aaggttacttaatagttcaaccgtcaggaataagttaaatgttttgaatcctgaggggtt 709
Query: 148 atatgaaaattatgttggaggagatgaggtagcgctgaataattcgaagtactcttcttt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 atatgaaaattatgttggaggagatgaggtagcgctgaataattcgaagtactcttcttt 769
Query: 208 tcaagatgtgttttttaaaatcaagatgcctcgttctataaaaaaggcaagttatatcaa 267
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 tcaagatgtgtttaataaaatcaagatgcctcgttctataaaaaaggcaagttatatcaa 829
Query: 268 ccgccagcgtgatttatcctttgaaatgctaactacacattctggagatacacatattat 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 ccgccagcgtgatttatcctttgaaatgctaactacacattctggagatacacatattat 889
Query: 328 cgacatggaaaatcatggtgaatggcccatagaccacgaccatttaggaaagtcaggaac 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 cgacatggaaaatcatggtgaatggcccatagaccacgaccatttaggaaagtcaggaac 949
Query: 388 tcataaacttgaatcatggatatccgtctccaaatgctctaataacaactctggaagccg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950 tcataaacttgaatcatggatatccgtctccaaatgctctaataacaactctggaagccg 1009
Query: 448 aaaacagtctaaattcattaaaaaatataatgctctcaaagggtcccatcatagtgttca 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1010 aaaacagtctaaattcattaaaaaatataatgctctcaaagggtcccatcatagtgttca 1069
Query: 508 aagaaagctagaggcaagacatatacaaatgattgcctctggatcttcgttgggagttgg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1070 aagaaagctagaggcaagacatatacaaatgattgcctctggatcttcgttgggagttgg 1129
Query: 568 tttatttc-tacttcaggaaaagcgtttactattgcaggcccatttggagcactgctcgg 626
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1130 tttatttcttacttcaggaaaagcgtttactattgcaggcccatttggagcactgctcgg 1189
Query: 627 atatgtactttgtggaagtattgtgattgcatcaacactttcatttacag-actatgtgc 685
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 1190 atatgtactttgtggaagtattgtgatggcatcaacactttcatttacagaactatgtgc 1249
Query: 686 tctaattcctttgacatcaggattttccggactcgcgtttaaatttgtagaagacccttt 745
||||||||| |||||||||||||||||||||||||||| || ||||||||||||| | ||
Sbjct: 1250 tctaattccattgacatcaggattttccggactcgcgtctagatttgtagaagacgcgtt 1309
Query: 746 tggatttgccctgggatggctttattggttttcatttattttagcacgt-caagcc-agg 803
|||||||||| ||||||||||||||||||||||||||||| ||||| | |||||| ||
Sbjct: 1310 tggatttgccttgggatggctttattggttttcatttattatagcagttccaagccaagt 1369
Query: 804 ggtgggcagtactttgttggtaaatttttatccaatcttgtaatttaagttcgggcaaaa 863
||||| |||||| ||||| |||||| |||| || |||| ||||||||||| |||||||
Sbjct: 1370 ggtggcaagtactatgttgttaaattattat-cagtctttgaatttaagttctggcaaaa 1428
Query: 864 ttcccggctttgtc 877
|| | |||||||||
Sbjct: 1429 ttgcaggctttgtc 1442
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6475
Number of Sequences: 1807
Number of extensions: 6475
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)