BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZD06RM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1422 1205 0.0
>3x_Contig1422
Length = 9570
Score = 1205 bits (608), Expect = 0.0
Identities = 670/687 (97%), Gaps = 4/687 (0%)
Strand = Plus / Minus
Query: 49 agaaggggtcaaacagaaaatcaaagaagcctccagcatttgctaaaaagggtatgaaga 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5207 agaaggggtcaaacagaaaatcaaagaagcctccagcatttgctaaaaagggtatgaaga 5148
Query: 109 tcattgccgttatcgagactaatgaaccggtatgtgttgaaacatacgatgattacccac 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5147 tcattgccgttatcgagactaatgaaccggtatgtgttgaaacatacgatgattacccac 5088
Query: 169 aattgggtagattcactttaagagatcaaggtaccaccattgctatcggttttattgtga 228
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 5087 aattgggtagattcactttaagagatcaaggtaccaccattgctatcggtaagattgtga 5028
Query: 229 aaatccttgaaaattgatctcggtttttatgaatccatatcacaatgcatatttactagg 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5027 aaatccttgaaaattgatctcggtttttatgaatccatatcacaatgcatatttactagg 4968
Query: 289 tgtctagtctagattgtatatttagtttttaatctttcaaaaatgtctataagactttca 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4967 tgtctagtctagattgtatatttagtttttaatctttcaaaaatgtctataagactttca 4908
Query: 349 accccgtcaagtacattgtcatctattcctaatcctggggtaaatttggtatgtgcaaaa 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4907 accccgtcaagtacattgtcatctattcctaatcctggggtaaatttggtatgtgcaaaa 4848
Query: 409 tctattatcgacatgcgactcaattctgtctttcctgatatgctctcctttgactgtcca 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4847 tctattatcgacatgcgactcaattctgtctttcctgatatgctctcctttgactgtcca 4788
Query: 469 tctttaatggacccttcctcatccgaatcatatgatacatgggacggtattaattcttgt 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4787 tctttaatggacccttcctcatccgaatcatatgatacatgggacggtattaattcttgt 4728
Query: 529 tcctgagagaagttgatccaccgagtagtatcgcattcatatatgaatagaacgctactt 588
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 4727 tcctgagagaagttgatccaccgagtagtatcgcattcatatatgaatagaaggctactt 4668
Query: 589 gatatcatgcgaacctcttcattc-atagcgtattatagaaaagctgaaccctttttgaa 647
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 4667 gatatcatgcgaacctcttcattcaatagcgtattatagaaaagctgaagcctttttgaa 4608
Query: 648 aacatgtgaattcaatcattaccatttttggagtgaaagattattattgccaaaggacat 707
||||||||||| ||||||||| | |||||||||||||||||||||| ||||||| |||
Sbjct: 4607 aacatgtgaatcaaatcattacga-ttttggagtgaaagattattatcgccaaagtacaa 4549
Query: 708 attaaaatggcgtccgttacattcgaa 734
|| ||| ||||||||||||||||||
Sbjct: 4548 atcaaa--tgcgtccgttacattcgaa 4524
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8023
Number of Sequences: 1807
Number of extensions: 8023
Number of successful extensions: 77
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)