BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZD07FM1.SCF screened BAC_end
(912 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig511 626 e-179
3x_Contig1600 121 3e-27
>3x_Contig511
Length = 2409
Score = 626 bits (316), Expect = e-179
Identities = 323/324 (99%), Gaps = 1/324 (0%)
Strand = Plus / Minus
Query: 86 taagcaactttcgt-cttaaatctggaaatgaagcctcgcttggagattgggaggttgaa 144
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 taagcaactttcgtacttaaatctggaaatgaagcctcgcttggagattgggaggttgaa 276
Query: 145 aaaataatctccacactcattgcgaaaagaattaaacaacttgaaaatctaccctctaat 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aaaataatctccacactcattgcgaaaagaattaaacaacttgaaaatctaccctctaat 216
Query: 205 ttgggaacatattctttaaatgatgcgcttgattttgtaactaaagatgatattcctacc 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 ttgggaacatattctttaaatgatgcgcttgattttgtaactaaagatgatattcctacc 156
Query: 265 ggcgcagacgacttcaagttaagagctttggtggagctcaagtccttgaaaatgctaacg 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 ggcgcagacgacttcaagttaagagctttggtggagctcaagtccttgaaaatgctaacg 96
Query: 325 aaacagaaatctttgagaaagaggctgattgaaagtgttgcagctaaatcgcataatatc 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 aaacagaaatctttgagaaagaggctgattgaaagtgttgcagctaaatcgcataatatc 36
Query: 385 attccatctctccgtgactctcct 408
||||||||||||||||||||||||
Sbjct: 35 attccatctctccgtgactctcct 12
>3x_Contig1600
Length = 9359
Score = 121 bits (61), Expect = 3e-27
Identities = 154/172 (89%), Gaps = 10/172 (5%)
Strand = Plus / Plus
Query: 696 acgtttagcagccttgaagtccaatgatgaagaagcatattttgaattgttagaccaaac 755
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
Sbjct: 5 acgtttagcagccttgaagtccaatgatgaagaagcata-ttggaattgttagaccaacc 63
Query: 756 c-aagatac-aggatttcccatctattg-aaccaactaatt-tttcttggattct-ttgc 810
| ||||||| || ||| | ||||||||| ||| |||||||| ||||||||||||| ||||
Sbjct: 64 caaagatacaagaattacacatctattgaaacaaactaattctttcttggattctcttgc 123
Query: 811 tcaagc-gttagagtgc-gcanaatga-gttcgcatc-aaaggggtgaagaa 858
|||||| |||||||||| ||| ||||| || |||||| ||||||||||||||
Sbjct: 124 tcaagcggttagagtgcagcaaaatgaggtacgcatcaaaaggggtgaagaa 175
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7536
Number of Sequences: 1807
Number of extensions: 7536
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 2
length of query: 912
length of database: 10,358,551
effective HSP length: 16
effective length of query: 896
effective length of database: 10,329,639
effective search space: 9255356544
effective search space used: 9255356544
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)