BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZD07RM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1642 1340 0.0
>3x_Contig1642
Length = 16641
Score = 1340 bits (676), Expect = 0.0
Identities = 746/764 (97%), Gaps = 4/764 (0%)
Strand = Plus / Minus
Query: 47 cttccctcgaactataactttgaaatacataaaactgtatggaacattagaaagcacaaa 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15554 cttccctcgaactataactttgaaatacataaaactgtatggaacattagaaagcacaaa 15495
Query: 107 gcaaagcgtgttgctattcaaatgcctgaagggttgct-catatactctttggtgataag 165
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 15494 gcaaagcgtgttgctattcaaatgcctgaagggttgctgcatatactctttggtgataag 15435
Query: 166 tgatattttggagcagttctgtcagtgtgagattgtggttatgggcgatgtttcttatgg 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15434 tgatattttggagcagttctgtcagtgtgagattgtggttatgggcgatgtttcttatgg 15375
Query: 226 tgcatgctgtattgatgactatacagcaagatcgttggattgtgatttcattgtccatta 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15374 tgcatgctgtattgatgactatacagcaagatcgttggattgtgatttcattgtccatta 15315
Query: 286 tgcacattcctgcttagttccgatcgatattactactatcaaggtactttacatctttgt 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15314 tgcacattcctgcttagttccgatcgatattactactatcaaggtactttacatctttgt 15255
Query: 346 cactatcaatattgatgagacacatctaataaagacgttacagaagaacttcccaagagg 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15254 cactatcaatattgatgagacacatctaataaagacgttacagaagaacttcccaagagg 15195
Query: 406 ttcacggattgctgcattcggaacaattcagtttaatccaactatccatagtatgaagga 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15194 ttcacggattgctgcattcggaacaattcagtttaatccaactatccatagtatgaagga 15135
Query: 466 caaattgttgcagtcggaggaacacatgttatatatcatcccccctcagatcaaaccact 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15134 caaattgttgcagtcggaggaacacatgttatatatcatcccccctcagatcaaaccact 15075
Query: 526 ttcgaagggtgaagttcttgggtgtacttctgaaagacttaaacaggaacaaatagatgc 585
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 15074 ttcgaagggtgaagttcttgggtgtacttctgaaagactaaacaaggaacaaatagatgc 15015
Query: 586 gatggtttatgttggggatggtaggtttcatttagaatcggccatgatttcataaccctg 645
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 15014 gatggtttatgttggggatggtaggtttcatttagaatcggccatga-ttcataaccctg 14956
Query: 646 aaatttctgcttttagatatgatccctataatagaagattcaccagagaacgtttcgatc 705
||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 14955 aaattcctgctttcagatatgatccctataatagaagattcaccagagaacgttacgatc 14896
Query: 706 agaagccatttggtagaggttagaacatctgccattgataaagctcgcatttcgaag-aa 764
||||| || ||||||||||| ||| |||||||||||||||||||||||| ||||||| ||
Sbjct: 14895 agaag-caattggtagaggtaagagcatctgccattgataaagctcgcagttcgaagaaa 14837
Query: 765 gtttgtttgatacttggcgcgttaggtagaacaggtaatttagc 808
||| |||||||||||||||||||||||||| ||||||| ||||
Sbjct: 14836 gttggtttgatacttggcgcgttaggtagacaaggtaatctagc 14793
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6305
Number of Sequences: 1807
Number of extensions: 6305
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)