BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZD08FM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1509 1191 0.0
>3x_Contig1509
Length = 8584
Score = 1191 bits (601), Expect = 0.0
Identities = 693/721 (96%), Gaps = 2/721 (0%)
Strand = Plus / Minus
Query: 89 atcttagagtcttcagcttcaacaccaacggcttcaagaacgttcttgatttcagtagcg 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6733 atcttagagtcttcagcttcaacaccaacggcttcaagaacgttcttgatttcagtagcg 6674
Query: 149 gatggagattcaacaccaccttgagcgatcaacaagtaagctgccaagtacttcatttct 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6673 gatggagattcaacaccaccttgagcgatcaacaagtaagctgccaagtacttcatttct 6614
Query: 209 ggtccggttttattttgaaataatcgatttaagcaagaagcagactattccttggtctat 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6613 ggtccggttttattttgaaataatcgatttaagcaagaagcagactattccttggtctat 6554
Query: 269 taggaaatatgataataaataaataacaaaccagaaagaacaagaaacaaagagaggttt 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6553 taggaaatatgataataaataaataacaaaccagaaagaacaagaaacaaagagaggttt 6494
Query: 329 aagtatataataaatattcgaattatatagccttgtattaagttgaacaagttttaaact 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6493 aagtatataataaatattcgaattatatagccttgtattaagttgaacaagttttaaact 6434
Query: 389 cttctcatctctatttttttttcttcaatttcatccaagaaactttgcatcatcgtgaaa 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6433 cttctcatctctatttttttttcttcaatttcatccaagaaactttgcatcatcgtgaaa 6374
Query: 449 aatttcagactattctttgtaatcatgtacgaccactcgctaattgttggttgtctcatg 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6373 aatttcagactattctttgtaatcatgtacgaccactcgctaattgttggttgtctcatg 6314
Query: 509 aaaaaagttactaatcattatacacggaaatacaaccacaacgatatttgaatctaagag 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6313 aaaaaagttactaatcattatacacggaaatacaaccacaacgatatttgaatctaagag 6254
Query: 569 tgccacgtcatatatacatccgggtaacattcgtaaattctgtttcgcattctctttctt 628
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 6253 tgccacgtcatatatacatccgggtaacattcgtaaattctgtttcgcattctctttc-t 6195
Query: 629 ttttggactcttggatcgcacgcagtttccatttagaagaatacaaatttttttcgcaac 688
|||||||||||||||||||||||||||||||||||||||| |||||| | || |||| |
Sbjct: 6194 ttttggactcttggatcgcacgcagtttccatttagaagatcacaaatatattccgcagc 6135
Query: 689 caggatacttgcatatttcatacttacttgatgcatacgggaaaaggggccccttatttt 748
|||||||||||||||||||| ||||||||||||||| ||||||| || | | || |
Sbjct: 6134 agtgatacttgcatatttcatacgtacttgatgcatacgtgaaaaggagcacataatata 6075
Query: 749 aacccaggt-ggcatatagggtatgtttcaaatttgtccagatgtgtctggataaatgac 807
||| || || ||||||||| |||||| |||||| ||| ||||||||| ||||||||||
Sbjct: 6074 aacacaagtaggcatatagtgtatgtatcaaatatgtacagatgtgttctgataaatgac 6015
Query: 808 a 808
|
Sbjct: 6014 a 6014
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,958
Number of Sequences: 1807
Number of extensions: 10958
Number of successful extensions: 104
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)