BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZD08RM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1633 1342 0.0
>3x_Contig1633
Length = 12594
Score = 1342 bits (677), Expect = 0.0
Identities = 786/813 (96%), Gaps = 8/813 (0%)
Strand = Plus / Minus
Query: 48 tggctgattgaatctttttttgctgtactggagagggagatgtcaaatctacaacgtccc 107
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 tggctgattgaatctttttctgctgtactggagagggagatgtcaaatctacaacgtccc 1322
Query: 108 tcttttttaagccatttatcttattctcaagtaatatgttgacaaattgattgatattaa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 tcttttttaagccatttatcttattctcaagtaatatgttgacaaattgattgatattaa 1262
Query: 168 gcaatttcacaccatgtcgtagtgaggtttcggcaatagacttgtcaaatttctctaaaa 227
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1261 gcaatttcacaccatgtcgtagtgaggtttcggcaatagacttgtcaaattcctctaaaa 1202
Query: 228 gttttgtgctttctgaattcattttctgtgatatactggagccaagcacaacggcaggct 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 gttttgtgctttctgaattcattttctgtgatatactggagccaagcacaacggcaggct 1142
Query: 288 catggttagttgatagaaacttatctaactctgaagagttggctaataactttgcatctc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 catggttagttgatagaaacttatctaactctgaagagttggctaataactttgcatctc 1082
Query: 348 cgcctcccacttcaatggtataacgcaatgtatcatacattttttgctcgaaaacaatca 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 cgcctcccacttcaatggtataacgcaatgtatcatacattttttgctcgaaaacaatca 1022
Query: 408 aagtcatgtttgatagcacattaggaacgtatctataagatggaaataatttgtggcgat 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 aagtcatgtttgatagcacattaggaacgtatctataagatggaaataatttgtggcgat 962
Query: 468 tcaaaaggccttggtacattgactgaaaatctaaatagtttccttgttgtaacaatttgc 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 tcaaaaggccttggtacattgactgaaaatctaaatagtttccttgttgtaacaatttgc 902
Query: 528 ccatttggttcaaaaactcgatacttacaacaggaacacctttaagtaaagcaaataaac 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 ccatttggttcaaaaactcgatacttacaacaggaacacctttaagtaaagcaaataaac 842
Query: 588 aaccgctgtagcttgaactatctgaacatatttgtgtttgtggttttcttagagaaagat 647
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 841 aaccgctgtagcttgaactatctgaacatatttgtg-ttgtggttttcttagagaaggat 783
Query: 648 tcagaaagcttcacaccanaatctggaaccagngattntgnttcattcagttctaatctg 707
|||||||||||||||||| |||||| |||||| |||| || |||||||||||||||||||
Sbjct: 782 tcagaaagcttcacaccaaaatctgaaaccagtgattttgtttcattcagttctaatctg 723
Query: 708 ggtggaatcttccattcttcgtagaaatatcgtacatttacattcgattggcattgctcc 767
|||| |||||||||||||||||||||||||||||||| ||| ||||||||||| || |
Sbjct: 722 tgtggtatcttccattcttcgtagaaatatcgtacattaaca-tcgattggcatacct-c 665
Query: 768 caatatttatcactgtattcctgattgtgttacaccaatggtctcattttaagggaatat 827
||||||||||||||||||| ||||||||| ||| ||||||||||| | ||||||||| |
Sbjct: 664 caatatttatcactgtatt-ctgattgtg-taccacaatggtctca-tctaagggaat-t 609
Query: 828 atttcttttttaaacttttgaaagtttaccctt 860
||||||| |||||| |||| ||||||||||||
Sbjct: 608 atttcttcattaaac-tttgtaagtttaccctt 577
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,248
Number of Sequences: 1807
Number of extensions: 13248
Number of successful extensions: 125
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)