BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC28ZD09FM1.SCF screened BAC_end
         (944 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1673                                                        1229   0.0  

>3x_Contig1673 
          Length = 13723

 Score = 1229 bits (620), Expect = 0.0
 Identities = 671/680 (98%), Gaps = 6/680 (0%)
 Strand = Plus / Minus

                                                                         
Query: 102   attttacagaattacacagtccgcggcctcattgcaaaacttaccagaaactaccccaga 161
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12143 attttacagaattacacagtccgcggcctcattgcaaaacttaccagaaactaccccaga 12084

                                                                         
Query: 162   tgaatcactttttaaattgcaattgagaaggtaccaaaagcaaagtttgtcatggatgct 221
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12083 tgaatcactttttaaattgcaattgagaaggtaccaaaagcaaagtttgtcatggatgct 12024

                                                                         
Query: 222   caaaagagaatacgagtatagtcatttatcagagaaagccgcagaagtgtctattgatgg 281
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12023 caaaagagaatacgagtatagtcatttatcagagaaagccgcagaagtgtctattgatgg 11964

                                                                         
Query: 282   gaatagtatgaatccactatggaagaaattccgctggccatctaattcaaaacaagggac 341
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11963 gaatagtatgaatccactatggaagaaattccgctggccatctaattcaaaacaagggac 11904

                                                                         
Query: 342   tccaaaccacgaagatgattgcttcttttatgctaatttatacactggtgagttttctat 401
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11903 tccaaaccacgaagatgattgcttcttttatgctaatttatacactggtgagttttctat 11844

                                                                         
Query: 402   cgagaagccggtcattaagacgataatcaatggaggtattttggcggatgagatgggtct 461
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11843 cgagaagccggtcattaagacgataatcaatggaggtattttggcggatgagatgggtct 11784

                                                                         
Query: 462   agggaaaacaatatcagctttagcattgatttgtactgctagctatgatgaggctcatga 521
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11783 agggaaaacaatatcagctttagcattgatttgtactgctagctatgatgaggctcatga 11724

                                                                         
Query: 522   aaagaaaattgagtcaaccaaaaagccttctatgaaggagatgtcttctcaagtggattc 581
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11723 aaagaaaattgagtcaaccaaaaagccttctatgaaggagatgtcttctcaagtggattc 11664

                                                                         
Query: 582   ctctccattacgccattctc-acataagcatgacacttatgctt-caggacgacgttgat 639
             |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 11663 ctctccattacgccattctcaacataagcatgacacttatgcttacaggacgacgttgat 11604

                                                                         
Query: 640   agtagtgccgatgtccttattgaatcagtggcattcagaattcgaaaaggccaacaaggt 699
             ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| 
Sbjct: 11603 agtagtgccgatgtccttattgaatcagtggcaatcagaattcgaaaaggccaacaagg- 11545

                                                                         
Query: 700   acctcaaaaaacgttgtgaaatttattacgggaattattttaaaagatttaaggggcgta 759
             ||||||||||||||||||||||||||||||||||| || || |||||||||| |||||||
Sbjct: 11544 acctcaaaaaacgttgtgaaatttattacgggaataatatt-aaagatttaa-gggcgta 11487

                                 
Query: 760   tgtgctttggccccaacgct 779
             ||||| ||||||||||||||
Sbjct: 11486 tgtgc-ttggccccaacgct 11468


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6309
Number of Sequences: 1807
Number of extensions: 6309
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)