BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZD09RM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1709 1368 0.0
>3x_Contig1709
Length = 16948
Score = 1368 bits (690), Expect = 0.0
Identities = 757/778 (97%), Gaps = 1/778 (0%)
Strand = Plus / Minus
Query: 47 tggaactggtcgattctcatagatcagatttgtgttcggtaattaatgagtttagtgaaa 106
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 16318 tggaactggtcgattctcaaagatcagatttgtgttcggtaattaatgagtttagtgaaa 16259
Query: 107 ctttgaaagcactggctgatttggaattatcgaatcgaacatcagatctacttcaaaact 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16258 ctttgaaagcactggctgatttggaattatcgaatcgaacatcagatctacttcaaaact 16199
Query: 167 ttgcggaagtccaccttcgtataaaagagtctacttccaggagctcaatgcaggattcgc 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16198 ttgcggaagtccaccttcgtataaaagagtctacttccaggagctcaatgcaggattcgc 16139
Query: 227 taacacttggcataactatcgatgataatctcagggcaataggtagtgtgaaagccgtgc 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16138 taacacttggcataactatcgatgataatctcagggcaataggtagtgtgaaagccgtgc 16079
Query: 287 taaatcaaaggaaaaaactcggttactatattctgcttgttgaaaacgacctgaataaga 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16078 taaatcaaaggaaaaaactcggttactatattctgcttgttgaaaacgacctgaataaga 16019
Query: 347 agcaaacccaattcaacaaagtgtcaggaaactctgccaatagtgaaaaggccacctcaa 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16018 agcaaacccaattcaacaaagtgtcaggaaactctgccaatagtgaaaaggccacctcaa 15959
Query: 407 ttgaaaacgaacttcgcatcctcacatcccgatgcaataaaataaaacaggaatggcaga 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15958 ttgaaaacgaacttcgcatcctcacatcccgatgcaataaaataaaacaggaatggcaga 15899
Query: 467 caatcgctgaagttataagaaaagatgttaaccaacatgacgtcgatacaattgaagatt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15898 caatcgctgaagttataagaaaagatgttaaccaacatgacgtcgatacaattgaagatt 15839
Query: 527 ttaggaataacatggaaatataccttgagtcagccattgaaagtcaaaaagagtgcattg 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15838 ttaggaataacatggaaatataccttgagtcagccattgaaagtcaaaaagagtgcattg 15779
Query: 587 aaatttgggaaacgttctaccagaataatctataaattatgaataatggtttactgtcat 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15778 aaatttgggaaacgttctaccagaataatctataaattatgaataatggtttactgtcat 15719
Query: 647 ttgtattatatatttcctaaaccctttacgtcttctttttgggcatcattttcttttttg 706
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||| || |
Sbjct: 15718 ttgtattatatatttcctaaacccttaacgtcttcttttttggcatcattttcttcttcg 15659
Query: 707 acaaagatgcttgcaagaagatctattttgccttggtggttacctagctcgtggaatgaa 766
||||||||||| |||| |||||||||||| |||| || ||||||||||||| |||||||
Sbjct: 15658 acaaagatgctgccaagtagatctattttgtcttgttgtttacctagctcgttgaatgaa 15599
Query: 767 acgatctttccattaaaggcaaaaaattattttttgggcgttaaacttgatactacgg 824
|||||| | |||| |||||||||| || ||| | | |||||| |||||||||||||||
Sbjct: 15598 acgatcatcccatcaaaggcaaaacataattctct-ggcgttcaacttgatactacgg 15542
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7695
Number of Sequences: 1807
Number of extensions: 7695
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)