BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZD10RM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1763 1296 0.0
>3x_Contig1763
Length = 22654
Score = 1296 bits (654), Expect = 0.0
Identities = 696/708 (98%), Gaps = 2/708 (0%)
Strand = Plus / Minus
Query: 44 ctttcgccattggcagaagctggtgctaaattgatagtcgatttaccatcgcagaagatc 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15290 ctttcgccattggcagaagctggtgctaaattgatagtcgatttaccatcgcagaagatc 15231
Query: 104 atggatgctgaaggtaatgttcttgtggatcatttcgatgttgagcctttcagaaaacac 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15230 atggatgctgaaggtaatgttcttgtggatcatttcgatgttgagcctttcagaaaacac 15171
Query: 164 tgtttggttaacggtcttgatgatattggtatcacaatgcagaaagaagagtacattgct 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15170 tgtttggttaacggtcttgatgatattggtatcacaatgcagaaagaagagtacattgct 15111
Query: 224 aagtatgaagccatgagaagagacaggttctctttcttagaaggtggttccaaactaata 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15110 aagtatgaagccatgagaagagacaggttctctttcttagaaggtggttccaaactaata 15051
Query: 284 aaacctatcaagggtactaagaagagtccatttggtaacagggctcaagagtggtaatcc 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15050 aaacctatcaagggtactaagaagagtccatttggtaacagggctcaagagtggtaatcc 14991
Query: 344 tgcatcaaattaaattgattaacctatcacattatttatcgtacatcaatttactattga 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14990 tgcatcaaattaaattgattaacctatcacattatttatcgtacatcaatttactattga 14931
Query: 404 accattatttatttattacatactttgcctagtatttaagtcacattatttcaagtcata 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14930 accattatttatttattacatactttgcctagtatttaagtcacattatttcaagtcata 14871
Query: 464 accgtcatgaagtcagttgagattgattaaatacagttcttatgatctaaattacaaatt 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14870 accgtcatgaagtcagttgagattgattaaatacagttcttatgatctaaattacaaatt 14811
Query: 524 attactccaatcaagactganaactgggaatcagaatccaaacggattgctggatgacgc 583
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 14810 attactccaatcaagactgaaaactgggaatcagaatccaaacggattgctggatgacgc 14751
Query: 584 attanagatatttgcttgtctttgttgctgagcttgtggaccgttacc-aaaccg-attc 641
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||| || |
Sbjct: 14750 attaaagatatttgcttgtctttgttgctgagcttgtggaccgttaccaaaaccgaatcc 14691
Query: 642 agttggctgattctgcaatggttgctgggacaaattcatattctgggagggatttgttac 701
||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 14690 agttggctgattctgcagtggttgctgggacaaattcatattctggaaggaatttgttac 14631
Query: 702 ttgattgaccccttcttggttattgaaggatgtttgaggggctgtatt 749
||||||||| ||| ||||||||||||| ||||||||||| ||||||||
Sbjct: 14630 ttgattgacacctccttggttattgaatgatgtttgaggtgctgtatt 14583
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7789
Number of Sequences: 1807
Number of extensions: 7789
Number of successful extensions: 78
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)