BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC28ZD11FM1.SCF screened BAC_end (943 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig694 1128 0.0 >3x_Contig694 Length = 2435 Score = 1128 bits (569), Expect = 0.0 Identities = 670/693 (96%), Gaps = 8/693 (1%) Strand = Plus / Minus Query: 88 ttttataataaaacacaatgtttatttgcatattttatccaaatccttcaaatggacaga 147 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1081 ttttataataaaacacaatgtttatttgcatattttatccaaatccttcaaatggacaga 1022 Query: 148 atattagacgtttcgaccaggttttgggacttcaagctctgcaataagccaattccgcag 207 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1021 atattagacgtttcgaccaggttttgggacttcaagctctgcaataagccaattccgcag 962 Query: 208 aaagtagtaacattttttgccagaaaatggggccttgatgtaaaacatgcagaaactatt 267 ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 961 aaagtagtaacatcaattgccagaaaatggggccttgatgtagaacatgcagaaactatt 902 Query: 268 agaactaatttctaccttcactcttcgttacatttgatagatgcggatgtttggattcac 327 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 901 agaactaatttctaccttcactcttcgttacatttgatagatgcggatgtttggattcac 842 Query: 328 cttcaaaagagattggtcaagttaaacctaccatcagccaatttatcatcaaatgcattc 387 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 841 cttcaaaagagattggtcaagttaaacctaccatcagccaatttatcatcaaatgcattc 782 Query: 388 gaaaaagatcctttgtactcggctgcttcctcggtagatgcaccaatggatttaaatctt 447 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 781 gaaaaagatcctttgtactcggctgcttcctcggtagatgcaccaatggatttaaatctt 722 Query: 448 gacctttcaaacttcttcgatcttgatgccaatttaggttttccttccttctccttctag 507 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 721 gacctttcaaacttcttcgatcttgatgccaatttaggttttccttccttctccttctag 662 Query: 508 ttattcttcatcttacccttcaataatatgtccatgtaaatagtaaatgataattgtaac 567 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 661 ttattcttcatcttacccttcaataatatgttcatgtaaatagtaaatgataattgtaac 602 Query: 568 agtaaaatatctaaattgggaactgaactttgactctaacgccctgtataaatccctact 627 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 601 agtaaaatatctaaattggaaactgaactttgactctaacgccctgtataaatccctact 542 Query: 628 atgtatcaccttttgggtttatgtccttcgttttcttgatcacattggaagacctttttg 687 |||||||||| ||||||||||||| |||||||||| |||||||||||| ||||| ||| | Sbjct: 541 atgtatcacc-tttgggtttatgt-cttcgttttc-tgatcacattgg-agaccctttcg 486 Query: 688 gtatactcttcgacgtaactttaaatttgacacgcgaattttattgtccttatttaaggg 747 |||||| |||||||||||||||||||||||||||||||| | |||| |||||||||| Sbjct: 485 tcatactc-tcgacgtaactttaaatttgacacgcgaatttca-tgtcactatttaaggg 428 Query: 748 tttaaagaaagttcaccattggttgaaaaagct 780 |||||| |||||| |||| ||| |||||||||| Sbjct: 427 tttaaa-aaagtt-accaatgggtgaaaaagct 397 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7788 Number of Sequences: 1807 Number of extensions: 7788 Number of successful extensions: 55 Number of sequences better than 1.0e-20: 1 length of query: 943 length of database: 10,358,551 effective HSP length: 16 effective length of query: 927 effective length of database: 10,329,639 effective search space: 9575575353 effective search space used: 9575575353 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)