BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC28ZD11RM1.SCF screened BAC_end
         (993 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1409                                                        1110   0.0  

>3x_Contig1409 
          Length = 9404

 Score = 1110 bits (560), Expect = 0.0
 Identities = 630/648 (97%), Gaps = 4/648 (0%)
 Strand = Plus / Minus

                                                                        
Query: 44   cttgtcttgtcgggatatacctttgtgct-caacaagtctttttaactctaatgatgttt 102
            ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 4976 cttgtcttgtcgggatataccttggtgctacaacaagtctttttaactctaatgatgttt 4917

                                                                        
Query: 103  tttctgatcccaaagatttcttgttggggattcagaatttaggtgtgaaggatctctact 162
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4916 tttctgatcccaaagatttcttgttggggattcagaatttaggtgtgaaggatctctact 4857

                                                                        
Query: 163  tgactccagaattactgtatttgataatggataaagccgctggattattggcgtctcaat 222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 4856 tgactccagaattactgtatttgataatggataaagccgctggattattggcgtcacaat 4797

                                                                        
Query: 223  ctaaacaaaacgcaagtctgaagaaagaagttcttttgaaaaatggatccactatctcca 282
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4796 ctaaacaaaacgcaagtctgaagaaagaagttcttttgaaaaatggatccactatctcca 4737

                                                                        
Query: 283  gtggatttatgacaaatattcaaaatataatggtccctttcaatggccgtcctaaattca 342
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4736 gtggatttatgacaaatattcaaaatataatggtccctttcaatggccgtcctaaattca 4677

                                                                        
Query: 343  ctactatagaggcattgttagcaaaatactctcacttaggagtctcttcttcccaagtca 402
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4676 ctactatagaggcattgttagcaaaatactctcacttaggagtctcttcttcccaagtca 4617

                                                                        
Query: 403  actacgtctatgaacatcatttcaatccctttatatcgatgcgatcttacctaggaattc 462
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4616 actacgtctatgaacatcatttcaatccctttatatcgatgcgatcttacctaggaattc 4557

                                                                        
Query: 463  cccctgttgatatttatttggagccaatttgtttcagagaaggcataatcagtgaagtgg 522
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4556 cccctgttgatatttatttggagccaatttgtttcagagaaggcataatcagtgaagtgg 4497

                                                                        
Query: 523  atccagataccatttccaccgacagaattggaaaaatatgttcatttacaggattcaggt 582
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4496 atccagatacca-ttccaccgacagaattggaaaaatatgttcatttacaggattcaggt 4438

                                                                        
Query: 583  attgtaccccgttgtcccgatgtgttcattat-aatcctgaaactcttgaaccatgttac 641
            || ||||||  |||| ||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 4437 atagtacccgtttgtaccgatgtgtccattatcaatcctgaaactcttgaaccatgttac 4378

                                                            
Query: 642  gagaaaataatttgagaaatttggtgctgtttaaaaagctaccgtttt 689
            ||||||  |||  ||||||| |||||||| || | |||||||||||||
Sbjct: 4377 gagaaagaaataggagaaatatggtgctg-ttcagaagctaccgtttt 4331


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9429
Number of Sequences: 1807
Number of extensions: 9429
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 993
length of database: 10,358,551
effective HSP length: 16
effective length of query: 977
effective length of database: 10,329,639
effective search space: 10092057303
effective search space used: 10092057303
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)