BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC28ZD11RM1.SCF screened BAC_end (993 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1409 1110 0.0 >3x_Contig1409 Length = 9404 Score = 1110 bits (560), Expect = 0.0 Identities = 630/648 (97%), Gaps = 4/648 (0%) Strand = Plus / Minus Query: 44 cttgtcttgtcgggatatacctttgtgct-caacaagtctttttaactctaatgatgttt 102 ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct: 4976 cttgtcttgtcgggatataccttggtgctacaacaagtctttttaactctaatgatgttt 4917 Query: 103 tttctgatcccaaagatttcttgttggggattcagaatttaggtgtgaaggatctctact 162 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4916 tttctgatcccaaagatttcttgttggggattcagaatttaggtgtgaaggatctctact 4857 Query: 163 tgactccagaattactgtatttgataatggataaagccgctggattattggcgtctcaat 222 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 4856 tgactccagaattactgtatttgataatggataaagccgctggattattggcgtcacaat 4797 Query: 223 ctaaacaaaacgcaagtctgaagaaagaagttcttttgaaaaatggatccactatctcca 282 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4796 ctaaacaaaacgcaagtctgaagaaagaagttcttttgaaaaatggatccactatctcca 4737 Query: 283 gtggatttatgacaaatattcaaaatataatggtccctttcaatggccgtcctaaattca 342 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4736 gtggatttatgacaaatattcaaaatataatggtccctttcaatggccgtcctaaattca 4677 Query: 343 ctactatagaggcattgttagcaaaatactctcacttaggagtctcttcttcccaagtca 402 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4676 ctactatagaggcattgttagcaaaatactctcacttaggagtctcttcttcccaagtca 4617 Query: 403 actacgtctatgaacatcatttcaatccctttatatcgatgcgatcttacctaggaattc 462 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4616 actacgtctatgaacatcatttcaatccctttatatcgatgcgatcttacctaggaattc 4557 Query: 463 cccctgttgatatttatttggagccaatttgtttcagagaaggcataatcagtgaagtgg 522 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4556 cccctgttgatatttatttggagccaatttgtttcagagaaggcataatcagtgaagtgg 4497 Query: 523 atccagataccatttccaccgacagaattggaaaaatatgttcatttacaggattcaggt 582 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4496 atccagatacca-ttccaccgacagaattggaaaaatatgttcatttacaggattcaggt 4438 Query: 583 attgtaccccgttgtcccgatgtgttcattat-aatcctgaaactcttgaaccatgttac 641 || |||||| |||| ||||||||| |||||| ||||||||||||||||||||||||||| Sbjct: 4437 atagtacccgtttgtaccgatgtgtccattatcaatcctgaaactcttgaaccatgttac 4378 Query: 642 gagaaaataatttgagaaatttggtgctgtttaaaaagctaccgtttt 689 |||||| ||| ||||||| |||||||| || | ||||||||||||| Sbjct: 4377 gagaaagaaataggagaaatatggtgctg-ttcagaagctaccgtttt 4331 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9429 Number of Sequences: 1807 Number of extensions: 9429 Number of successful extensions: 65 Number of sequences better than 1.0e-20: 1 length of query: 993 length of database: 10,358,551 effective HSP length: 16 effective length of query: 977 effective length of database: 10,329,639 effective search space: 10092057303 effective search space used: 10092057303 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)