BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZD12FM1.SCF screened BAC_end
(965 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1763 987 0.0
>3x_Contig1763
Length = 22654
Score = 987 bits (498), Expect = 0.0
Identities = 561/576 (97%), Gaps = 6/576 (1%)
Strand = Plus / Minus
Query: 86 ccagattgtatacaaggccaagaggatccctatacaaatcgccaatcaaatttaattatc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10975 ccagattgtatacaaggccaagaggatccctatacaaatcgccaatcaaatttaattatc 10916
Query: 146 caaactaaattgaaatcaaaaactaattgaatgcaggaatacgagacacttcctttttgt 205
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 10915 caaactaaattgaaatcaaaaactaaaagaatgcaggaatacgagacacttcctttttgt 10856
Query: 206 cgtctcttttctg-attatgctatttccttttatttctccgttttgattggttttttttt 264
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10855 cgtctcttttcggtattatgctatttccttttatttctccgttttgattggttttttttt 10796
Query: 265 ttctcttttgcacaattgcaatgcaactcgcgcactctatctaaacctcaagagtttgtc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10795 ttctcttttgcacaattgcaatgcaactcgcgcactctatctaaacctcaagagtttgtc 10736
Query: 325 tggcctttctaacccaattcaagctaaaacttgtttatacgaattacttatatatgtata 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10735 tggcctttctaacccaattcaagctaaaacttgtttatacgaattacttatatatgtata 10676
Query: 385 gacatatatatatttatatatgttctaagtatattgatagacttattcaattattttggg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10675 gacatatatatatttatatatgttctaagtatattgatagacttattcaattattttggg 10616
Query: 445 cctaatcttntctcattttctgattctctcattttcactcagaaaaagaacaaatgaaaa 504
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10615 cctaatcttttctcattttctgattctctcattttcactcagaaaaagaacaaatgaaaa 10556
Query: 505 taccgacagcacgcagcaccggttcctggcagtgtggtacaagaacctgcagttttcgaa 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10555 taccgacagcacgcagcaccggttcctggcagtgtggtacaagaacctgcagttttcgaa 10496
Query: 565 ttgtttttctgtgatccttttgggtacccggggttgggttttcctacatgatgataccgg 624
||||||||||||||||| ||||| |||||||||||| | |||| |||||||||||| |||
Sbjct: 10495 ttgtttttctgtgatcc-tttggttacccggggttgtg-tttcgtacatgatgata-cgg 10439
Query: 625 tgatccccggaatctgaaaataaaaaggggttcttg 660
||||||| | ||||| |||||||||||||||||||
Sbjct: 10438 tgatccc--ggatctggaaataaaaaggggttcttg 10405
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 18,098
Number of Sequences: 1807
Number of extensions: 18098
Number of successful extensions: 393
Number of sequences better than 1.0e-20: 1
length of query: 965
length of database: 10,358,551
effective HSP length: 16
effective length of query: 949
effective length of database: 10,329,639
effective search space: 9802827411
effective search space used: 9802827411
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)