BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZD12RM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1389 1001 0.0
>3x_Contig1389
Length = 7926
Score = 1001 bits (505), Expect = 0.0
Identities = 598/625 (95%), Gaps = 3/625 (0%)
Strand = Plus / Minus
Query: 49 atctaacaagtgagattccaattctgcatcatcaacatcatccaaattttcaggatgatc 108
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6170 atctaacaagtgagaatccaattctgcatcatcaacatcatccaaattttcaggatgatc 6111
Query: 109 gctgacttttgaaagcagagaagctgtggtgggtaataaatgtaaatttcttggtctata 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6110 gctgacttttgaaagcagagaagctgtggtgggtaataaatgtaaatttcttggtctata 6051
Query: 169 tggatccttttcaagactatatccatcaatttcatccagggaacgttttttgtctttctc 228
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 6050 tggatccttttcaagactatatccatcaatttcatccagggaacgtttcttgtctttctc 5991
Query: 229 agttttgtgtaagtcttctccatcgattccatgcgtagcttttatacgactgaattcagc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5990 agttttgtgtaagtcttctccatcgattccatgcgtagcttttatacgactgaattcagc 5931
Query: 289 ttttctgcgttcagaaagcttcttcaaataataaaggacttctttagacgatagttcctg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5930 ttttctgcgttcagaaagcttcttcaaataataaaggacttctttagacgatagttcctg 5871
Query: 349 cgctccgagcacttgagtcaaaattggatttcttgacacggcttcctcgcttgtctccaa 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5870 cgctccgagcacttgagtcaaaattggatttcttgacacggcttcctcgcttgtctccaa 5811
Query: 409 catctctttagtatccaaagaatcttttattttcttttcctttagtctgttcttatcgaa 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5810 catctctttagtatccaaagaatcttttattttcttttcctttagtctgttcttatcgaa 5751
Query: 469 actaggaggttttcgattcggcacttctctcaccctcatttacctcagtttcattatcac 528
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 5750 actaggagg-tttcgattcggcacttctctcaccctcatttacctcagtttcatcatcac 5692
Query: 529 ggaactctttcaccgagagcttaactgatgttgaattcttaaactatttcaat-tttgct 587
||||||||||||| ||||||||| ||||||||| ||||||||||| |||||| ||||||
Sbjct: 5691 ggaactctttcacggagagcttagctgatgttgtattcttaaactcattcaatctttgct 5632
Query: 588 gaaccgttttcttttgcacatggaaatattggcacgatttcgaaaggcgttctttttaaa 647
||| ||||| || | |||| || |||||| ||||||||| || |||||||| | |||
Sbjct: 5631 gaagcgtttcctctgcaacat-gagatattgccacgatttcagaatgcgttcttctcaaa 5573
Query: 648 ttgttcattcttccggcaaataaga 672
||||||||||| | ||||| |||||
Sbjct: 5572 ttgttcattctacaggcaagtaaga 5548
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9985
Number of Sequences: 1807
Number of extensions: 9985
Number of successful extensions: 85
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)