BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZE01FM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1576 839 0.0
>3x_Contig1576
Length = 13648
Score = 839 bits (423), Expect = 0.0
Identities = 470/479 (98%), Gaps = 5/479 (1%)
Strand = Plus / Plus
Query: 85 caataagctcaggcacaagatctagctctgtgaacgattcgaagatttcttctgattctt 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6173 caataagctcaggcacaagatctagctctgtgaacgattcgaagatttcttctgattctt 6232
Query: 145 ctggttgttcattggaattagaatctttactgttactttgtgctgaatcttcgtcggatg 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6233 ctggttgttcattggaattagaatctttactgttactttgtgctgaatcttcgtcggatg 6292
Query: 205 gggaaggttcgttagcatgtgcttgctgctgcttctccaatgcctttctcttgatcttct 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6293 gggaaggttcgttagcatgtgcttgctgctgcttctccaatgcctttctcttgatcttct 6352
Query: 265 cagctaatgaaaggacctgattgtttttaactgcttgcttcttttcgattttagccattg 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6353 cagctaatgaaaggacctgattgtttttaactgcttgcttcttttcgattttagccattg 6412
Query: 325 caatactttataattttttggttctttaggcaaatattatgtactctaatcaaaagcagc 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6413 caatactttataattttttggttctttaggcaaatattatgtactctaatcaaaagcagc 6472
Query: 385 tacttcaactattacaagatcttacttgaaatgactaaacttagctaacactatttcctc 444
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 6473 tacttcaactattacaagatcttacttgaaatgactaaactaagctaacactatttcctc 6532
Query: 445 gtgttgcacttaatctcatctcatcgcatctttaaaacttcactgtatttcggttttttt 504
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 6533 gtgttgcacttaatctcatctcatcgcatctttaaaacttcactgta-ttcgg-tttttt 6590
Query: 505 tcttaagacacttgaaactggggaaaagaaaacgttctctttcattatatgaaaatttt 563
||||| ||||| |||||||| ||||||| |||||||||| |||| ||||||||||||||
Sbjct: 6591 tcttaggacac-tgaaactgtggaaaag-aaacgttctc-ttcagtatatgaaaatttt 6646
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,540
Number of Sequences: 1807
Number of extensions: 10540
Number of successful extensions: 263
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)