BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZE01RM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1352 1065 0.0
>3x_Contig1352
Length = 6660
Score = 1065 bits (537), Expect = 0.0
Identities = 652/680 (95%), Gaps = 9/680 (1%)
Strand = Plus / Plus
Query: 48 ctttaatttctctcc-tgcct-atatattggtggagactgttcgaattataagaagtggt 105
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1813 ctttaatttctctccatgcctcatatattggtggagactgttcgaattataagaagtggt 1872
Query: 106 attttgccgcccaactagatttagatgaagagattggattcccttacatgaaacttcatg 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1873 attttgccgcccaactagatttagatgaagagattggattcccttacatgaaacttcatg 1932
Query: 166 gtaaatcaaagaagagaaatgcaaagttcgcaagcgagaaaggtatttcaattaaatatc 225
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 1933 gtaaatcaaagaagagaaatgcaaagttcgcaagcgagaaaggtatttcaattaaagagc 1992
Query: 226 aacaacgactgtggaaacagaagcaggatgaatttttggagaattatcccaaaattataa 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1993 aacaacgactgtggaaacagaagcaggatgaatttttggagaattatcccaaaattataa 2052
Query: 286 tgtcagaaaatgagaggaaaactggttcctcatataaagccgccgattacaaatggaaaa 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2053 tgtcagaaaatgagaggaaaactggttcctcatataaagccgccgattacaaatggaaaa 2112
Query: 346 tgaagatgaactctcttacttcatcacaaatgactagacagctagcgttatatttattaa 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2113 tgaagatgaactctcttacttcatcacaaatgactagacagctagcgttatatttattaa 2172
Query: 406 tctggggagaagcaaaccaattgagatttacaccagaatgcctctgttttatatttaagt 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2173 tctggggagaagcaaaccaattgagatttacaccagaatgcctctgttttatatttaagt 2232
Query: 466 gcgcattagattatgattctagcttgcaggacatcgaagattcatcccaagatgaaatta 525
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 2233 gcgcattagattatgattctagcttgcaggacatcgaagattcatcccaagatgaattta 2292
Query: 526 cttttctaaataatatcatcaccccgatttacaaattcatcaggaatcaaagtttat-ca 584
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||
Sbjct: 2293 cttttctaaataatatcatcaccccgatttacaaattcatcagggatc-aagtttataca 2351
Query: 585 ctagattcacagggcaaacttataagaagtaaaagggacccccaggattttattgggttc 644
|||||||||||||||||||| |||||||| ||| ||||| | ||||| ||||||||| |
Sbjct: 2352 ctagattcacagggcaaactaataagaagggaaaaggaccacaaggatattattgggtac 2411
Query: 645 gatgattgtgaatcaatt-ttttgggattccctgagggaatcgacgggattggccctaaa 703
||||| |||||||||||| |||||| || ||||| |||||||| ||||| | ||||||
Sbjct: 2412 gatga-tgtgaatcaattattttggtat--cctgaaggaatcgaacggatt-gtcctaaa 2467
Query: 704 ttttggagcaagattggttg 723
| |||||||||||||||||
Sbjct: 2468 atctggagcaagattggttg 2487
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,573
Number of Sequences: 1807
Number of extensions: 21573
Number of successful extensions: 289
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)