BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZE02FM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1755 1094 0.0
>3x_Contig1755
Length = 22936
Score = 1094 bits (552), Expect = 0.0
Identities = 617/632 (97%), Gaps = 5/632 (0%)
Strand = Plus / Plus
Query: 86 aatgatagcctgaaaatccactataaatccggcctgtctagtgattgtccctttaatcga 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1925 aatgatagcctgaaaatccactataaatccggcctgtctagtgattgtccctttaatcga 1984
Query: 146 tgtgctgtctggcgcggcacctgatgtgttaacggagacactattcccattggtaagagg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1985 tgtgctgtctggcgcggcacctgatgtgttaacggagacactattcccattggtaagagg 2044
Query: 206 cattcgaaatttttcatgactagatagttggtttatgcatttctcaacatggtccataac 265
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2045 cattcgaaatttctcaggactagatagttggtttatgcatttctcaacatggtccataac 2104
Query: 266 gttaggtagctcaggctttatgatttctttaatcaaccatgtctgttgtaacaaagagct 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2105 gttaggtagctcaggctttatgatttctttaatcaaccatgtctgttgtaacaaagagct 2164
Query: 326 ctcctcatatgtaggagcatttttatatgccccat-cattatataattccgtagtcatct 384
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 2165 ctcctcatatgtaggagcatttttatatgccccatgcattatataattccgtagtcatct 2224
Query: 385 cggatttatgcaattgagaattaatgtagcaaagctcccttagcgtgtagatagcaagag 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2225 cggatttatgcaattgagaattaatgtagcaaagctcccttagcgtgtagatagcaagag 2284
Query: 445 ccttgctaagatgggcgttttcctttgtcaacctttttactattcttttgcctttttcgt 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2285 ccttgctaagatgggcgttttcctttgtcaacctttttactattcttttgcctttttcgt 2344
Query: 505 atgatgattcttctgaat-tttcaaatttaaacctttttttgaagttgatgcgactcacc 563
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2345 atgatgattcttctgaatatttcaaatttaaaccttttcttgaagttgatgcgactcacc 2404
Query: 564 cacatatactttaactagagataaaggaagatcattgaaaattgtaaagtggttgt-att 622
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 2405 cacatatactttaactagagataaaggaagatcattgaaaattgtaaagtggttgtaatt 2464
Query: 623 gaaaatgcttgcgttgattatgatcaaggttt-cacagattctagatttgacttaattgg 681
|||| |||| |||| ||||| ||||||||||| |||||||||||||||||||| |||||
Sbjct: 2465 gaaattgctggcgtggattaggatcaaggtttacacagattctagatttgactcaattga 2524
Query: 682 ccagttgtacttccgggacacagctttttatt 713
| |||||||| |||||||||||||||||||||
Sbjct: 2525 cgagttgtac-tccgggacacagctttttatt 2555
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7370
Number of Sequences: 1807
Number of extensions: 7370
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)