BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZE02RM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig935 726 0.0
3x_Contig1192 670 0.0
>3x_Contig935
Length = 3546
Score = 726 bits (366), Expect = 0.0
Identities = 400/409 (97%), Gaps = 2/409 (0%)
Strand = Plus / Minus
Query: 380 ttgacaaaatcaacagcttatactggaaagacatattcaagattctctcatcaccatatt 439
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 3546 ttgacaaaatcaacatcttatacttgaaagacatattcaagattctctcatcaccatatt 3487
Query: 440 ctgtcgggatcgcaggcggtaaaccctcgtcatcattatacttttttggatatcaaaatg 499
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3486 ctgtcgggatcgccggcggtaaaccctcgtcatcattatacttttttggatatcaaaatg 3427
Query: 500 aaaatcttttctaccttgatccacacaacactcagcaatcttctttaatgatggatgatc 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3426 aaaatcttttctaccttgatccacacaacactcagcaatcttctttaatgatggatgatc 3367
Query: 560 ttgaattttaccgaagttgtcacggacacaaattcaacaaattgcatatatcagaaacag 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3366 ttgaattttaccgaagttgtcacggacacaaattcaacaaattgcatatatcagaaacag 3307
Query: 620 atccgtcaatgttactcggtatgttaattt-aggtaagaatgaatgggatcagtttcata 678
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 3306 atccgtcaatgttactcggtatgttaatttcaggtaagaatgaatgggatcagtttcata 3247
Query: 679 cttatttcagagatagtcaaattattcaatttttgacaaccaggccaganaatgatttat 738
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 3246 cttatttcagagatagtcaaattattcaatttttgacaaccaggccagaaaatgatttat 3187
Query: 739 ttcatagtgccaatatgtcttggcggttctgattctattcactcattgg 787
||| |||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 3186 atcaaagtgccaatatgtc-tgtcggttctgattctattcactcattgg 3139
>3x_Contig1192
Length = 5015
Score = 670 bits (338), Expect = 0.0
Identities = 354/358 (98%), Gaps = 1/358 (0%)
Strand = Plus / Plus
Query: 45 gcttgccagggagttcagaataaatgcttcaagaatagatgataatgagttaaatctgat 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4659 gcttgccagggagttcagaataaatgcttcaagaatagatgataatgagttaaatctgat 4718
Query: 105 ccgttggtttcaagacgatgtcaaatatcctttgtcgttacacaactttgtcaaagcaga 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4719 ccgttggtttcaagacgatgtcaaatatcctttgtcgttacacaactttgtcaaagcaga 4778
Query: 165 agagaaaatatctggaatgaaacctgggcagtggtttgggccaagcgcaacagtcttaag 224
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 4779 agagaaaatatctggaatgaaacctgggcagtggtttgggccaagcgcaacagccagaag 4838
Query: 225 cataaaaacattgattgaagggtttcccctttgtggaattaagaattgtataatttcaac 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4839 cataaaaacattgattgaagggtttcccctttgtggaattaagaattgtataatttcaac 4898
Query: 285 tcagtcggcagatatatacgaagatgaggtcacaagaatttttcataaggatagggatgc 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4899 tcagtcggcagatatatacgaagatgaggtcacaagaatttttcataaggatagggatgc 4958
Query: 345 taatttacttctgctgtttgctgtcaggttgggtgttgacaaaatcaacagcttatac 402
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 4959 taatttacttctgctgtttgctgtcaggttgggtgttgacaaaat-aacagcttatac 5015
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8065
Number of Sequences: 1807
Number of extensions: 8065
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 2
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)