BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZE03FM1.SCF screened BAC_end
(906 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1806 1170 0.0
3x_Contig1745 942 0.0
3x_Contig883 692 0.0
>3x_Contig1806
Length = 53694
Score = 1170 bits (590), Expect = 0.0
Identities = 647/662 (97%), Gaps = 3/662 (0%)
Strand = Plus / Minus
Query: 86 cccaatctaccaagttctctgatttcattaaaacttccggtaatcgtcatagattgtgga 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47281 cccaatctaccaagttctctgatttcattaaaacttccggtaatcgtcatagattgtgga 47222
Query: 146 ttttgatctggactgcaattttcacacaactttccggaaatggattagtgtcttactatt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47221 ttttgatctggactgcaattttcacacaactttccggaaatggattagtgtcttactatt 47162
Query: 206 tatcaaaagtcttcaactccattggtataactgatcctgatgatcaattgaaatggaatg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47161 tatcaaaagtcttcaactccattggtataactgatcctgatgatcaattgaaatggaatg 47102
Query: 266 gttggttaatgctttacaactggttatgttcactaattttaataggttacatcgccccat 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47101 gttggttaatgctttacaactggttatgttcactaattttaataggttacatcgccccat 47042
Query: 326 tcttcaaaagaagacaattattcttgatatccttagtttcaatgacttcttgttacgttg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47041 tcttcaaaagaagacaattattcttgatatccttagtttcaatgacttcttgttacgttg 46982
Query: 386 tgtggacagcattgtctgcagaaaaccaaaagcgtaattttgaggataagactctagcaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46981 tgtggacagcattgtctgcagaaaaccaaaagcgtaattttgaggataagactctagcaa 46922
Query: 446 atggagtcttggcaatgatcttcttatattatctttctttacacttcgggttcaacggtt 505
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 46921 atggagtcttggcaatgatcttcttatattatctttcttacaacttcgggttcaacggtt 46862
Query: 506 tcccaaatctttacacaactgaaatattaccttacactttgagaggtaaagggcttacaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46861 tcccaaatctttacacaactgaaatattaccttacactttgagaggtaaagggcttacaa 46802
Query: 566 tttttcagttagccattagtatttcagttatattcaatggggtttgtcaattcaattgca 625
|||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 46801 ttttccagttagccattagtatttcagttatattcaat-gggtttgtcaatccaattgca 46743
Query: 626 atggatgctattg-atgggaatactacatcttttattgctgcttcttatctgttgagaat 684
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 46742 atggatgctattgaatggaaatactacatcttttattgctgcttcttatctgttgagatt 46683
Query: 685 gtggtttgtta-ttcacttttggtgaaacttcaggaagatctttggaagaaatttatgag 743
|| |||||||| |||||||| | |||||||||||||||||||||||||||| || |||||
Sbjct: 46682 gttgtttgttatttcactttcgttgaaacttcaggaagatctttggaagaagttgatgag 46623
Query: 744 gt 745
||
Sbjct: 46622 gt 46621
>3x_Contig1745
Length = 19830
Score = 942 bits (475), Expect = 0.0
Identities = 610/651 (93%), Gaps = 3/651 (0%)
Strand = Plus / Plus
Query: 86 cccaatctaccaagttctctgatttcattaaaacttccggtaatcgtcatagattgtgga 145
|||| |||||||||||||||||||||||||||||||| |||||||| ||||| |||||||
Sbjct: 4535 cccagtctaccaagttctctgatttcattaaaacttctggtaatcgccataggttgtgga 4594
Query: 146 ttttgatctggactgcaattttcacacaactttccggaaatggattagtgtcttactatt 205
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 4595 ttttgatctggactgcaattttcacacaactttccggaaacggtttagtgtcttactatc 4654
Query: 206 tatcaaaagtcttcaactccattggtataactgatcctgatgatcaattgaaatggaatg 265
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 4655 tatcaaaagtcttcaactctattggtataactgatcctgatgatcaattgaaatggaatg 4714
Query: 266 gttggttaatgctttacaactggttatgttcactaattttaataggttacatcgccccat 325
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4715 gttggctaatgctttacaactggttatgttcactaattttaataggttacatcgccccat 4774
Query: 326 tcttcaaaagaagacaattattcttgatatccttagtttcaatgacttcttgttacgttg 385
|||||||||||||||| ||||| |||||||| |||||||| ||||||||||| |||||||
Sbjct: 4775 tcttcaaaagaagacagttatttttgatatctttagtttccatgacttcttgctacgttg 4834
Query: 386 tgtggacagcattgtctgcagaaaaccaaaagcgtaattttgaggataagactctagcaa 445
| |||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||
Sbjct: 4835 tttggacagcattgtctgcagaaaaccaaaagcgcaatttcgaggataagtctctagcaa 4894
Query: 446 atggagtcttggcaatgatcttcttatattatctttctttacacttcgggttcaacggtt 505
|||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 4895 atggtgtcttggcaatgatcttcttatattatctttcttacaacttcggattcaacggtt 4954
Query: 506 tcccaaatctttacacaactgaaatattaccttacactttgagaggtaaagggcttacaa 565
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 4955 tcccaaatctttacacaactgaaatattaccttatactttgagaggtaaagggcttacaa 5014
Query: 566 tttttcagttagccattagtatttcagttatattcaatggggtttgtcaattcaattgca 625
|||| ||||| |||||||| |||||||||||||||||| |||||||||||| || |||||
Sbjct: 5015 ttttccagttggccattagcatttcagttatattcaat-gggtttgtcaatccagttgca 5073
Query: 626 atggatgctattg-atgggaatactacatcttttattgctgcttcttatctgttgagaat 684
||||||||||||| |||| ||||||||||||||||||| || |||||| |||||||||
Sbjct: 5074 atggatgctattgaatggaaatactacatcttttattgttgtttcttagctgttgagatc 5133
Query: 685 gtggtttgtta-ttcacttttggtgaaacttcaggaagatctttggaagaa 734
|| |||||||| |||||||| | ||||||||||||||||||||||||||||
Sbjct: 5134 gttgtttgttatttcactttcgttgaaacttcaggaagatctttggaagaa 5184
>3x_Contig883
Length = 3346
Score = 692 bits (349), Expect = 0.0
Identities = 574/645 (88%), Gaps = 3/645 (0%)
Strand = Plus / Plus
Query: 92 ctaccaagttctctgatttcattaaaacttccggtaatcgtcatagattgtggattttga 151
||||||| |||||||||||| ||||||| ||||||||||| |||||||||||||||||||
Sbjct: 343 ctaccaacttctctgatttctttaaaacctccggtaatcgccatagattgtggattttga 402
Query: 152 tctggactgcaattttcacacaactttccggaaatggattagtgtcttactatttatcaa 211
|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
Sbjct: 403 tctggactgcaattttcacacaactttccggaaatggattggtgtcttactatctatcca 462
Query: 212 aagtcttcaactccattggtataactgatcctgatgatcaattgaaatggaatggttggt 271
|||||||||| || |||||||| || ||||||||||| ||||| | |||||||||||||
Sbjct: 463 aagtcttcaattcgattggtattacagatcctgatgagcaattagagtggaatggttggt 522
Query: 272 taatgctttacaactggttatgttcactaattttaataggttacatcgccccattcttca 331
|||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||
Sbjct: 523 taatgctttacaactggttatgttcattaattttgatgagttacatcgccccattcttca 582
Query: 332 aaagaagacaattattcttgatatccttagtttcaatgacttcttgttacgttgtgtgga 391
||||||| |||||||| ||||||||||| ||||||| | | ||| ||| |||| ||||
Sbjct: 583 aaagaaggcaattatttttgatatccttgacttcaatggcctgttgctacattgtctgga 642
Query: 392 cagcattgtctgcagaaaaccaaaagcgtaattttgaggataagactctagcaaatggag 451
|||| || ||||| ||||||||||| |||||||| |||||||| ||||||||||||| |
Sbjct: 643 cagctttatctgctgaaaaccaaaaacgtaatttcgaggataaatctctagcaaatggtg 702
Query: 452 tcttggcaatgatcttcttatattatctttctttacacttcgggttcaacggtttcccaa 511
||||||||||||||||||||||||||||||||| |||| || |||||||||| ||||
Sbjct: 703 tcttggcaatgatcttcttatattatctttcttacaactttggattcaacggttacccat 762
Query: 512 atctttacacaactgaaatattaccttacactttgagaggtaaagggcttacaatttttc 571
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct: 763 tcctctacacaactgaaattttaccttacactttgagaggtaaagggcttacaattttcc 822
Query: 572 agttagccattagtatttcagttatattcaatggggtttgtcaattcaattgcaatggat 631
|||| ||||||||| || ||||||| ||||| |||||||| || |||||||||||||||
Sbjct: 823 agttggccattagtcttgcagttattttcaa-cgggtttgttaactcaattgcaatggat 881
Query: 632 gctattg-atgggaatactacatcttttattgctgcttcttatctgttgagaatgtggtt 690
||||||| |||| ||||||||||||||||||| || |||||| | ||||||| ||| ||
Sbjct: 882 gctattgaatggaaatactacatcttttattgttgtttcttagccgttgagattgttgtc 941
Query: 691 tgtta-ttcacttttggtgaaacttcaggaagatctttggaagaa 734
||||| |||||||| | ||||||||| ||||||||||||||||||
Sbjct: 942 tgttatttcactttcgttgaaacttctggaagatctttggaagaa 986
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,261
Number of Sequences: 1807
Number of extensions: 10261
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 3
length of query: 906
length of database: 10,358,551
effective HSP length: 16
effective length of query: 890
effective length of database: 10,329,639
effective search space: 9193378710
effective search space used: 9193378710
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)