BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZE03RM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1406 1102 0.0
>3x_Contig1406
Length = 8172
Score = 1102 bits (556), Expect = 0.0
Identities = 641/656 (97%), Gaps = 10/656 (1%)
Strand = Plus / Plus
Query: 43 gctttaacaacctactacggccattggcgctgtccaagactgacctttaggcagttttct 102
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 6246 gctttaacaacctactacggccaatggcgctgtccaagactgacctttaggcagttttct 6305
Query: 103 cgtctgaacttcaaagtcacatcaaatcggactcgaatcgaaattttcgaagttttcaaa 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6306 cgtctgaacttcaaagtcacatcaaatcggactcgaatcgaaattttcgaagttttcaaa 6365
Query: 163 ctagaaaaaagaat-aaatt-ctgt-ccaaatgtatgaacgaccaactc-acatttt-ta 217
|||||||||||||| ||||| |||| ||||||||||||||||||||||| ||| ||
Sbjct: 6366 ctagaaaaaagaatcaaattactgtaccaaatgtatgaacgaccaactccacaaaacgta 6425
Query: 218 acggaattaaccagggtctcgctctctttccagacatccaagactaacgcgcgcacagat 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6426 acggaattaaccagggtctcgctctctttccagacatccaagactaacgcgcgcacagat 6485
Query: 278 aacacgaaccacgacttgaaccagaaatgccaccaccaccaaaagtttacggccaacaac 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6486 aacacgaaccacgacttgaaccagaaatgccaccaccaccaaaagtttacggccaacaac 6545
Query: 338 aacaaccttcgaactgggaaaagttcaagatgggtttgatgatgggtactaccgttggtg 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6546 aacaaccttcgaactgggaaaagttcaagatgggtttgatgatgggtactaccgttggtg 6605
Query: 398 tttgtactggcatcttattcggtggtgttgccattgttacacaaggcccaggtccaaacg 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6606 tttgtactggcatcttattcggtggtgttgccattgttacacaaggcccaggtccaaacg 6665
Query: 458 ggtttgtgagaaccttagggcagtacatcgctggttctgctgccacttttggcctattta 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6666 ggtttgtgagaaccttagggcagtacatcgctggttctgctgccacttttggcctattta 6725
Query: 518 tgagtatcggttctgtcattagaagtgatggaactttccgac-actcccacaacaatggt 576
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 6726 tgagtatcggttctgtcattagaagtgatggaac-ttccgacaactcccacaacaatggt 6784
Query: 577 ttctaccatagtaagatggccgaattgc-acagagatcaagatttgaagtatgg-aagct 634
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 6785 ttctaccatagtaagatggccgaattgcaacagagatcaagatttgaagtatggaaagct 6844
Query: 635 aaac-aacttatggtttgtacaaggattaagcgtttttacccagcaattgtacatg 689
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6845 aaacaaacttatggtttgtacaaggattaagcgtttttacccagcaattgtacatg 6900
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7190
Number of Sequences: 1807
Number of extensions: 7190
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)