BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZE05FM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1657 1178 0.0
>3x_Contig1657
Length = 14558
Score = 1178 bits (594), Expect = 0.0
Identities = 626/634 (98%), Gaps = 2/634 (0%)
Strand = Plus / Plus
Query: 85 cactggatgctccatcaatgtatctcttgtcttaatcacttgtcttttcaacttcatgaa 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13311 cactggatgctccatcaatgtatctcttgtcttaatcacttgtcttttcaacttcatgaa 13370
Query: 145 gtctttccaattcttacgctgttccttttctaagtctgccagcttctcttcgttaacagc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13371 gtctttccaattcttacgctgttccttttctaagtctgccagcttctcttcgttaacagc 13430
Query: 205 cacgtccacgtaggctagattcttagaccattctgtaatcatcacatctgcccattcttc 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13431 cacgtccacgtaggctagattcttagaccattctgtaatcatcacatctgcccattcttc 13490
Query: 265 aaacagctcgacgttctcttggcggagaacttcgacgtgatcgttcacttcgtctgccaa 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13491 aaacagctcgacgttctcttggcggagaacttcgacgtgatcgttcacttcgtctgccaa 13550
Query: 325 ttttcgtagatgagcgcgtatctcttgtgatagtgcatcgaattgtgaatgtgctgccga 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13551 ttttcgtagatgagcgcgtatctcttgtgatagtgcatcgaattgtgaatgtgctgccga 13610
Query: 385 gaaatattcacgcattaattctctggtcatgtacttaggtagctgggtattgttttggtc 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13611 gaaatattcacgcattaattctctggtcatgtacttaggtagctgggtattgttttggtc 13670
Query: 445 gaaccatatggttttgttggtttttggatccacactttcagtgcaatttacatccatgat 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13671 gaaccatatggttttgttggtttttggatccacactttcagtgcaatttacatccatgat 13730
Query: 505 ggccttagtgattatttggaagttggtttgtgaagtgttactggctcttttcaatagatc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13731 ggccttagtgattatttggaagttggtttgtgaagtgttactggctcttttcaatagatc 13790
Query: 565 tgccaaagtaggttgaatgtgatctagtttctcctgagcgaactcattgatatcattttc 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13791 tgccaaagtaggttgaatgtgatctagtttctcctgagcgaactcattgatatcattttc 13850
Query: 625 gaaatctttcatagtgtttgacagtttgttttcaatcgttatttttccagacattaagtc 684
||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||
Sbjct: 13851 gaaatctttcatagtgtttgacagtttgttttcaatcgttattttccaggacataaagtc 13910
Query: 685 ggtttcttaacattttctttcttagacatatcac 718
||||||||||| |||||| | ||||||||||||
Sbjct: 13911 -gtttcttaaca-tttcttccatagacatatcac 13942
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6898
Number of Sequences: 1807
Number of extensions: 6898
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)