BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZE05RM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1803 1289 0.0
>3x_Contig1803
Length = 52241
Score = 1289 bits (650), Expect = 0.0
Identities = 744/762 (97%), Gaps = 10/762 (1%)
Strand = Plus / Minus
Query: 49 ttgctgcgaagaaaactctactggatctaaagaaccttccgaagtgctcttggttgattt 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14829 ttgctgcgaagaaaactctactggatctaaagaaccttccgaagtgctcttggttgattt 14770
Query: 109 ttttcgttctttacgttctttacgagattttaggtgttttgagagctcgaatagcattgc 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14769 ttttcgttctttacgttctttacgagattttaggtgttttgagagctcgaatagcattgc 14710
Query: 169 gaatgggttcttcgggtcaccaaacccacatagttgtagaatgtgcgattgagaaaatag 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14709 gaatgggttcttcgggtcaccaaacccacatagttgtagaatgtgcgattgagaaaatag 14650
Query: 229 tgaggaatgtctaaagaaatgttttaatctttctgcatcctgaatgaaaatcaaatttgg 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14649 tgaggaatgtctaaagaaatgttttaatctttctgcatcctgaatgaaaatcaaatttgg 14590
Query: 289 atcaaagaagttcccagaagaggagacaccaaatttgtgttgaaagtaatgtatgacgac 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14589 atcaaagaagttcccagaagaggagacaccaaatttgtgttgaaagtaatgtatgacgac 14530
Query: 349 attttgtaattctgatgattccagaaagcttggaagtaacatcacttctgtgtgctttaa 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14529 attttgtaattctgatgattccagaaagcttggaagtaacatcacttctgtgtgctttaa 14470
Query: 409 gtagtcaacaatgtgatttgtcctgtttccactgctgtcacgttcagcaaaagctctttg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14469 gtagtcaacaatgtgatttgtcctgtttccactgctgtcacgttcagcaaaagctctttg 14410
Query: 469 gtagatgttatctatgactaattgcatatactgcggggaaggaacaaaaatgtcttcaca 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14409 gtagatgttatctatgactaattgcatatactgcggggaaggaacaaaaatgtcttcaca 14350
Query: 529 gaaaacagattttcccaaattgacaaatgcttccaaagtgttttgttgaactgttgacat 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14349 gaaaacagattttcccaaattgacaaatgcttccaaagtgttttgttgaactgttgacat 14290
Query: 589 atgataatatagctttccatggccaaaagtgaatttcaggctttttctgtaccaatgctc 648
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 14289 atgataatatagcttcccatggccaaaagtgaatttcaggctttctctgtaccaatgctc 14230
Query: 649 agcactaagttttccatcaacgaatccgggaaggatttagagcgattgccatttttggat 708
|||||||||||| | |||||||||||| |||||||| |||||||||||||| || |||||
Sbjct: 14229 agcactaagtttccaatcaacgaatcc-ggaaggatatagagcgattgcca-ttctggat 14172
Query: 709 -aatcaccaagcctttctagccaggggattggagtacttttgggggtaattcctcc-aca 766
||||||||||||||||||||||||||| |||||||| ||||||||||| |||||| |||
Sbjct: 14171 aaatcaccaagcctttctagccagggga-tggagtac-tttgggggtaaatcctccaaca 14114
Query: 767 tattttgataagtgc-ataaatacttatgcgattgaattgac 807
|| |||||||| ||| |||||||| ||||||| |||||||||
Sbjct: 14113 ta-tttgataa-tgcaataaatacgtatgcga-tgaattgac 14075
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8221
Number of Sequences: 1807
Number of extensions: 8221
Number of successful extensions: 81
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)