BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZE06FM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1673 1146 0.0
>3x_Contig1673
Length = 13723
Score = 1146 bits (578), Expect = 0.0
Identities = 650/669 (97%), Gaps = 4/669 (0%)
Strand = Plus / Minus
Query: 86 ctgctggccaaagaagtggtagagcagggcgtacagggcctggtcattgttatcgtttat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6065 ctgctggccaaagaagtggtagagcagggcgtacagggcctggtcattgttatcgtttat 6006
Query: 146 actcctctgcagttttcgaaagagattttgagcagttttctaagcctgaaattttaagaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6005 actcctctgcagttttcgaaagagattttgagcagttttctaagcctgaaattttaagaa 5946
Query: 206 tgcctgtggagagtattgttttgcaaatgaagagcatggctgttcataatattgtgaatt 265
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct: 5945 tgcctgtggagagtatagttttgcaaatgaagagcatggctgttcataataaaacgaatt 5886
Query: 266 ttccattccctaccccacccgaaagaccagctttgatgaagtcaataaagctcttacaac 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5885 ttccattccctaccccacccgaaagaccagctttgatgaagtcaataaagctcttacaac 5826
Query: 326 acctaggtgcactcgacagtaatgaaagaatcactgatgatggtaaagcaatgagtttgt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5825 acctaggtgcactcgacagtaatgaaagaatcactgatgatggtaaagcaatgagtttgt 5766
Query: 386 ttccgctaagtccaagattttctaaaatgctgcttgttggtaatgaaagcgactgtttga 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5765 ttccgctaagtccaagattttctaaaatgctgcttgttggtaatgaaagcgactgtttga 5706
Query: 446 aatatgttgttaccattgtcagtgccctttcagtaggtgagccgtttttatctgaacaag 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5705 aatatgttgttaccattgtcagtgccctttcagtaggtgagccgtttttatctgaacaag 5646
Query: 506 agcttggtatcatggatactgtgcccaagacacaagatgaaggacanttagatgactatc 565
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 5645 agcttggtatcatggatactgtgcccaagacacaagatgaaggacaattagatgactatc 5586
Query: 566 ctgatcacgaagctgaagaaagaaaaaggctattgcgcttcaagttatgttaaaagcaaa 625
|||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 5585 ctgatcacgaagctgaggaaagaaaaaggctattgcgctccaag-tatgttaaaagcaaa 5527
Query: 626 attagatttagtaagcttgataaattcagtgattgttttccgtccttttaagtgcagtat 685
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 5526 attagatttagtaagcttgataaattcagtga-tgttttccgt-cttttaagtgcagtat 5469
Query: 686 cttgctttggatttcattccaaaggatcagcccagttttttctttgaaaaaaattttttt 745
| ||| ||||||||||||||||||||||||| ||||| |||| | ||||||||||| ||
Sbjct: 5468 c-tgcgttggatttcattccaaaggatcagcacagttctttcatggaaaaaaatttctta 5410
Query: 746 agggcaaaa 754
|||||||||
Sbjct: 5409 agggcaaaa 5401
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8317
Number of Sequences: 1807
Number of extensions: 8317
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)