BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZE06RM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1629 1203 0.0
>3x_Contig1629
Length = 12481
Score = 1203 bits (607), Expect = 0.0
Identities = 709/730 (97%), Gaps = 11/730 (1%)
Strand = Plus / Minus
Query: 48 gactatttaaaaa-catgaaaaaat-aagtgaaaaatttttaatagttcttcatctcatc 105
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 10492 gactatttaaaaaacatgaaaaaatcaagtgaaaaatttttaatagttcttcatctcatc 10433
Query: 106 atatgtaaagttgaaagtgtttaatggtatctactttgtttatttcccttccccatcgca 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10432 atatgtaaagttgaaagtgtttaatggtatctactttgtttatttcccttccccatcgca 10373
Query: 166 aaactctagaacggtaaccacagctctagctagttaatattaatacactatgtctcacag 225
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 10372 aaactctagaacggtaaccacagctctagctagttaatattaatacacaatgtctcacag 10313
Query: 226 aaagtacgaagctccacgtcacggtcatttaggtttcttgccaagaaagagagctgcctc 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10312 aaagtacgaagctccacgtcacggtcatttaggtttcttgccaagaaagagagctgcctc 10253
Query: 286 tgttagaggtagagttaagtctttcccaaaggacgaccaaactaagccagttgctttgac 345
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 10252 tgttagaggtagagttaagtctttcccaaaggacgaccaaactaaggcagttgctttgac 10193
Query: 346 ctctttcttgggttacaaggctggtatgtccactatcgttagagacttggacagaccagg 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10192 ctctttcttgggttacaaggctggtatgtccactatcgttagagacttggacagaccagg 10133
Query: 406 ttccaagttccacaagcgtgaagttgttgaagctgttaccgttgttgacaccccaccaat 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10132 ttccaagttccacaagcgtgaagttgttgaagctgttaccgttgttgacaccccaccaat 10073
Query: 466 cgttgttgtcggtgttgttggttacgttgaaaccccaagaggtttgagatccttgaccac 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10072 cgttgttgtcggtgttgttggttacgttgaaaccccaagaggtttgagatccttgaccac 10013
Query: 526 cgtctgggctgaacatttgtccgacgaagtcaagagaagattctacaagaactggtacaa 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10012 cgtctgggctgaacatttgtccgacgaagtcaagagaagattctacaagaactggtacaa 9953
Query: 586 gtccaagaagaaggctttcaccaagtactctgctaagtacgctgaaaacggtgccccaag 645
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 9952 gtccaagaagaaggctttcaccaagtactctgctaagtacgctgaaaacggtg-cccaag 9894
Query: 646 tcgacagagaatttggccagaatcaagaagtacgctttcttgtgtttagagtctttggtc 705
||||||||||| ||||||||||||||||||||||||| ||| |||||||| ||||||
Sbjct: 9893 tcgacagagaa-ttggccagaatcaagaagtacgctt--ctgttgttagagtc-ttggtc 9838
Query: 706 cacacccaagttcaaatagactttcattgtttcaaaagaaaggctcattttggctgaaat 765
|||||||||| ||| | |||| | |||||| ||||||| |||||||| ||||||||||||
Sbjct: 9837 cacacccaag-tcagaaagac-tccattgtctcaaaag-aaggctca-tttggctgaaat 9782
Query: 766 tcaattgaac 775
|||||||||
Sbjct: 9781 ccaattgaac 9772
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7291
Number of Sequences: 1807
Number of extensions: 7291
Number of successful extensions: 66
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)