BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZE07FM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig995 172 8e-43
>3x_Contig995
Length = 2553
Score = 172 bits (87), Expect = 8e-43
Identities = 205/239 (85%), Gaps = 4/239 (1%)
Strand = Plus / Minus
Query: 498 taaatccttggcttaagatgtactcatggaataattgtactcgttttccg-atacaggga 556
||||||||| ||||| || |||||| ||||||||||||| |||||| |||||||||
Sbjct: 2424 taaatccttttcttaatattaactcatttaataattgtactctttttccatatacaggga 2365
Query: 557 atctattgtagaat-ctcttgaatctgatttcacctccgaaatgaagcttgatttttaaa 615
||||||| || ||| ||||| |||||||||||| ||||||||||||||||||||| ||
Sbjct: 2364 atctattttataattctctttaatctgatttcaactccgaaatgaagcttgatttagtaa 2305
Query: 616 aagttccctg-aattgttttattgaatcccacactgccaatgcattggcaaaaccatata 674
|||||||||| ||||||||||| |||||| ||||||||||||||| |||||| ||||| |
Sbjct: 2304 aagttccctggaattgttttatagaatccgacactgccaatgcatcggcaaacccataga 2245
Query: 675 ttttgcaagcgaccattgtccta-cattgaaaggccccattaccgatttggtattattg 732
| |||| ||||||||| ||| || ||||||||| | | ||||| |||||| ||||||||
Sbjct: 2244 tattgcgagcgaccatagtcataccattgaaagtctcgattactgatttgttattattg 2186
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6992
Number of Sequences: 1807
Number of extensions: 6992
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)