BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC28ZE07RM1.SCF screened BAC_end
         (925 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1509                                                        1154   0.0  

>3x_Contig1509 
          Length = 8584

 Score = 1154 bits (582), Expect = 0.0
 Identities = 635/650 (97%), Gaps = 2/650 (0%)
 Strand = Plus / Minus

                                                                        
Query: 50   aatcttagagtcttcagctttaacaccaacggcttcaagaacgttcttgatttcagtagc 109
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 6734 aatcttagagtcttcagcttcaacaccaacggcttcaagaacgttcttgatttcagtagc 6675

                                                                        
Query: 110  ggatggagattcaacaccaccttgagcgatcaacaagtaagctgccaagtacttcatttc 169
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6674 ggatggagattcaacaccaccttgagcgatcaacaagtaagctgccaagtacttcatttc 6615

                                                                        
Query: 170  tggtccggttttattttgaaataatcgatttaagcaagaagcagactattttttggtcta 229
            ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 6614 tggtccggttttattttgaaataatcgatttaagcaagaagcagactattccttggtcta 6555

                                                                        
Query: 230  ttaggaaatatgataataaataaataacaaaccagaaagaacaagaaacaaagagaggtt 289
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6554 ttaggaaatatgataataaataaataacaaaccagaaagaacaagaaacaaagagaggtt 6495

                                                                        
Query: 290  taagtatataataaatattcgaattatatagccttgtattaagttgaacaagttttaaac 349
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6494 taagtatataataaatattcgaattatatagccttgtattaagttgaacaagttttaaac 6435

                                                                        
Query: 350  tcttctcatctctatttttttttcttcaatttcatccaagaaactttgcatcatcgtgaa 409
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6434 tcttctcatctctatttttttttcttcaatttcatccaagaaactttgcatcatcgtgaa 6375

                                                                        
Query: 410  aaatttcagactattctttgtaatcatgtacgaccactcgctaattgttggttgtctcat 469
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6374 aaatttcagactattctttgtaatcatgtacgaccactcgctaattgttggttgtctcat 6315

                                                                        
Query: 470  gaaaaaagttactaatcattatacacggaaatacaaccacaacgatatttgaatctaaga 529
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6314 gaaaaaagttactaatcattatacacggaaatacaaccacaacgatatttgaatctaaga 6255

                                                                        
Query: 530  gtgccacgtcatatttacatccgggtaacattcgtaaattctgtttcgcattctcttttc 589
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 6254 gtgccacgtcatatatacatccgggtaacattcgtaaattctgtttcgcattctc-tttc 6196

                                                                        
Query: 590  tttttggactcttggatcgcacgcagtttccatttagaaatatcccaatttatttccgca 649
            ||||||||||||||||||||||||||||||||||||| || ||| ||| |   |||||||
Sbjct: 6195 tttttggactcttggatcgcacgcagtttccatttag-aagatcacaaatatattccgca 6137

                                                              
Query: 650  gcagtgatacttgcatatttaatacctacttgatgcattcgtgaaaagga 699
            |||||||||||||||||||| |||| |||||||||||| |||||||||||
Sbjct: 6136 gcagtgatacttgcatatttcatacgtacttgatgcatacgtgaaaagga 6087


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,286
Number of Sequences: 1807
Number of extensions: 13286
Number of successful extensions: 144
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)