BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZE08FM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1728 1146 0.0
>3x_Contig1728
Length = 20685
Score = 1146 bits (578), Expect = 0.0
Identities = 664/686 (96%), Gaps = 5/686 (0%)
Strand = Plus / Minus
Query: 88 gcaacgtacgcttctaaccttctgttagatctttgtaaatgcttcactgcattattgatc 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7528 gcaacgtacgcttctaaccttctgttagatctttgtaaatgcttcactgcattattgatc 7469
Query: 148 tcttttctgatctcttgtaattcatgctcagacgattctctaatagcaatcacgaactct 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7468 tcttttctgatctcttgtaattcatgctcagacgattctctaatagcaatcacgaactct 7409
Query: 208 tgaatctgaattggtctacgaataccagaagaatgtgccatatttctatgttaagtctat 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7408 tgaatctgaattggtctacgaataccagaagaatgtgccatatttctatgttaagtctat 7349
Query: 268 ccttagctatgtatgttttttcactttttagtcttgtttcggttggaaagtacgagatga 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7348 ccttagctatgtatgttttttcactttttagtcttgtttcggttggaaagtacgagatga 7289
Query: 328 attaagatcggtatccttaactatatattcaagctagccttttataacaataatttaagc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7288 attaagatcggtatccttaactatatattcaagctagccttttataacaataatttaagc 7229
Query: 388 cagagtttattctcttactatttatacccaacggtaagatatcacgccccacatatgaca 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7228 cagagtttattctcttactatttatacccaacggtaagatatcacgccccacatatgaca 7169
Query: 448 cccacccctccgaggcaccatcattgcaaatcagagtgtatgatgcgcacgttactatgc 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7168 cccacccctccgaggcaccatcattgcaaatcagagtgtatgatgcgcacgttactatgc 7109
Query: 508 tgactttttccagctccaaagcaacactacttgttaaaaatcacatcagctttttctgct 567
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 7108 tgactttttccagctccaaagcaacactacttgttaaaaatcacatcagc-ttttctgct 7050
Query: 568 ttcctttcttctgggcctgaatttccccgcctaagtccttttctgggaactgaactttgt 627
||||||||| ||||| ||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 7049 ttcctttctcctggg-ctggatttccccgcctaagtccttctctgggaactgaactttgt 6991
Query: 628 tcctttcagcaaagagttgaaaaactcacgaggtacacaaaaacaacgagaatttagggg 687
||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||
Sbjct: 6990 ccctttcagcaaagagttgagaaactcacgaggaacacaaaaacaacgagaa-ttagggg 6932
Query: 688 ccgtttatgtaatttcttttcatcccataaacaaaaaaaattgggctggtttggctttcc 747
||| |||||||| |||||||||||||||||| | |||||||| |||| |||||| ||||
Sbjct: 6931 ccgcttatgtaa-ttcttttcatcccataaaacagaaaaattgtgctgttttggc-ttcc 6874
Query: 748 acccttacccttcgcaaaattagggg 773
|||| ||| || |||| ||| |||||
Sbjct: 6873 acccatacactacgcacaatcagggg 6848
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7691
Number of Sequences: 1807
Number of extensions: 7691
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)