BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZE08RM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1175 276 8e-74
>3x_Contig1175
Length = 4107
Score = 276 bits (139), Expect = 8e-74
Identities = 203/219 (92%), Gaps = 4/219 (1%)
Strand = Plus / Plus
Query: 600 ctgtggtaaaaaatacaaaaaatgagtgtgaagtaagaaatatatgggagagctgtcagg 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgtggtaaaaaatacaaaaaatgagtgtgaagtaagaaatatatgggagagctgtcagg 60
Query: 660 tatgggacgtttttcgacatttgcaagaaggctgtctaaagtataaagtgtacttatcaa 719
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 61 tatgggacg-ttttcgacattgcaaagaaggctgtctaaagtataaagtgtacttatcaa 119
Query: 720 aagattgattttttttgggcggtatcgggctggtttgaaccggcagaaattttctttttt 779
||||| || ||||||||||||||||| ||||||| ||||||||||| |||| ||||| ||
Sbjct: 120 aagatagactttttttgggcggtatc-ggctggtatgaaccggcag-aattctctttctt 177
Query: 780 aattttaccgtaattaagagttcctgaattgaattcaaa 818
| | ||| ||| | |||||||||||||||||||||||||
Sbjct: 178 agtcttaacgt-agtaagagttcctgaattgaattcaaa 215
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8004
Number of Sequences: 1807
Number of extensions: 8004
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)