BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZE09FM1.SCF screened BAC_end
(892 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1499 1110 0.0
>3x_Contig1499
Length = 7822
Score = 1110 bits (560), Expect = 0.0
Identities = 631/647 (97%), Gaps = 6/647 (0%)
Strand = Plus / Minus
Query: 86 tgtacaagaagtacgaggataaagggttcattgtgttgggtttcccatgtaaccagtttg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tgtacaagaagtacgaggataaagggttcattgtgttgggtttcccatgtaaccagtttg 615
Query: 146 gacatcaagagccaggtactgatgaagagatttctcagttctgtcaactaaactacggtg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gacatcaagagccaggtactgatgaagagatttctcagttctgtcaactaaactacggtg 555
Query: 206 tttctttcccaatcttgaagaaggttgatgtgaacggttctgaagctgacccagtctacg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tttctttcccaatcttgaagaaggttgatgtgaacggttctgaagctgacccagtctacg 495
Query: 266 acttcttgaagaacgaaaaatccggattgttgggtttcaagggtatcaaatggaactttg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 acttcttgaagaacgaaaaatccggattgttgggtttcaagggtatcaaatggaactttg 435
Query: 326 aaaaattccttgttgacaagaagggtaccgttgttgaaaggtacagttctttgactaagc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 aaaaattccttgttgacaagaagggtaccgttgttgaaaggtacagttctttgactaagc 375
Query: 386 catcttcgttagaagaacctattgaaaaattgttgaatgaataaatttgattaaaacaca 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 catcttcgttagaagaacctattgaaaaattgttgaatgaataaatttgattaaaacaca 315
Query: 446 gactccactctaccattcttgctctatttataaaatgtattgcactatcctcttccggaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 gactccactctaccattcttgctctatttataaaatgtattgcactatcctcttccggaa 255
Query: 506 gttgttaaaatcttttcattgaactgttggattctattctatatctaattaatttactgt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gttgttaaaatcttttcattgaactgttggattctattctatatctaattaatttactgt 195
Query: 566 gttcaaagtaaatatanccaactgatattaataataactattgat-attaaataatgata 624
|||||||||||||||| |||||||||| |||||||||||| |||| || |||||||||||
Sbjct: 194 gttcaaagtaaatataaccaactgataataataataacta-tgataataaaataatgata 136
Query: 625 ataataatattaagagtgataaaattgatc-aaaattgcctaaaaactaagg-actgttt 682
||||||||| ||||||||||||||| ||| |||||||| |||||||||||| |||||||
Sbjct: 135 ataataataataagagtgataaaatgaatcaaaaattgcataaaaactaaggaactgttt 76
Query: 683 tcgttttcaacaaa-tttattttattttagtttttatacaatggatt 728
|||||||||||||| ||||| |||||| || | ||||||||||||||
Sbjct: 75 tcgttttcaacaaattttatattatttcag-tattatacaatggatt 30
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,322
Number of Sequences: 1807
Number of extensions: 17322
Number of successful extensions: 308
Number of sequences better than 1.0e-20: 1
length of query: 892
length of database: 10,358,551
effective HSP length: 16
effective length of query: 876
effective length of database: 10,329,639
effective search space: 9048763764
effective search space used: 9048763764
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)