BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZE09RM1.SCF screened BAC_end
(907 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig548 890 0.0
>3x_Contig548
Length = 2225
Score = 890 bits (449), Expect = 0.0
Identities = 544/569 (95%), Gaps = 5/569 (0%)
Strand = Plus / Plus
Query: 189 aaacgtgatctaccggttcctattttggaatctgaagataaatgggacagaaaaattgac 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aaacgtgatctaccggttcctattttggaatctgaagataaatgggacagaaaaattgac 445
Query: 249 tatgctccatctttaaacgaacagtacgatgttaggtggatgattgcaggtcgtgaatct 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tatgctccatctttaaacgaacagtacgatgttaggtggatgattgcaggtcgtgaatct 505
Query: 309 gccgatggtttcgaatatggtcttttcgataaaggttccttccaagaaaccttgtctggt 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gccgatggtttcgaatatggtcttttcgataaaggttccttccaagaaaccttgtctggt 565
Query: 369 tgggccaagggtgttgttacaggtagagcccgtttaggtggtattccattaggtgttatt 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tgggccaagggtgttgttacaggtagagcccgtttaggtggtattccattaggtgttatt 625
Query: 429 gccgttgaaacaagaattgtcgaaaatttgattcctgctgatcctgctaatcctgattct 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gccgttgaaacaagaattgtcgaaaatttgattcctgctgatcctgctaatcctgattct 685
Query: 489 accgaaatgttgattcaagaagccggccaagtttggtatccaaattccgcgttcaagaca 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 accgaaatgttgattcaagaagccggccaagtttggtatccaaattccgcgttcaagaca 745
Query: 549 gcccaggctatcaatgacttcaatcatggggaacaatatgccatttaagatcctagcc-a 607
||||||||||||||||||||||||||||| ||||||| ||||||| | |||||||||| |
Sbjct: 746 gcccaggctatcaatgacttcaatcatggtgaacaat-tgccattaatgatcctagccaa 804
Query: 608 ctggagaggtttcttttgtggaccacgtgatatgttcaacgaagttttg-agtatggttc 666
|||||||||||||| | |||||| ||||||||||| ||||||||||||| ||||||||||
Sbjct: 805 ctggagaggtttctctggtggacaacgtgatatgtacaacgaagttttgaagtatggttc 864
Query: 667 cttcatcgttgatgccttgggtggtttcaaacggccttttattacattcattccttccaa 726
|||||||||||||| |||| || || ||||| |||| | ||||||| ||||||| | |
Sbjct: 865 tttcatcgttgatgcattggttgattacaaacagcctataattacatacattcctccaac 924
Query: 727 tggtgaacctaagagg-gggtcttgggtt 754
||||||| |||||||| || |||||||||
Sbjct: 925 tggtgaa-ctaagaggtggttcttgggtt 952
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6462
Number of Sequences: 1807
Number of extensions: 6462
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)