BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZE11FM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1676 926 0.0
>3x_Contig1676
Length = 15800
Score = 926 bits (467), Expect = 0.0
Identities = 640/687 (93%), Gaps = 8/687 (1%)
Strand = Plus / Minus
Query: 94 gaaagaatctcaagtaattttgtttgcatcgattctatttcctcttgaccagttagaaat 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10161 gaaagaatctcaagtaattttgtttgcatcgattctatttcctcttgaccagttagaaat 10102
Query: 154 accaaaatatcacctggtaattttttggtggtatgaatttgaaagatggtggtgatcgca 213
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 10101 accaaaatatcacctggtaatttttgggtggtatgaatttgaaagatggtggtgatcgca 10042
Query: 214 gcatttatatagttctcttctggttgaagtgttttttgaatatccacaggaaagcgtcta 273
|||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 10041 gcatttatatagtttccttctggttgaagtgtatagtgaatatccacaggaaagcgtcta 9982
Query: 274 ccaggaacattaaatatcggacaatcaaagaagaacttggagaatttagtagcattcata 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9981 ccaggaacattaaatatcggacaatcaaagaagaacttggagaatttagtagcattcata 9922
Query: 334 gttgcactagaaattataagtcgaagatcttttctgtcttgtaaaataccccttagcaac 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9921 gttgcactagaaattataagtcgaagatcttttctgtcttgtaaaataccccttagcaac 9862
Query: 394 cccaacaaaatatctgtagataacgtgcgctcgtgagcctcgtcaatcattattgcacta 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9861 cccaacaaaatatctgtagataacgtgcgctcgtgagcctcgtcaatcattattgcacta 9802
Query: 454 tacgatgatagttgtgggtcattaataaattctcgaagtaacatcccatctgtcgtatat 513
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 9801 tacgatgatagttgtgggtcattaagaaattctcgaagtaacatcccatctgtcgtatat 9742
Query: 514 cttaagactgttctatcaggccgttgttcggccattaaatttgatattataaccgacttc 573
|||||| |||| ||||||| |||||||||| ||| |||| |||||||||||||||||||
Sbjct: 9741 tttaagattgttttatcagg-cgttgttcggtcatcaaatctgatattataaccgacttc 9683
Query: 574 tttccccaatattacatccatttcatcagctacttttgattcaat-cttgttgcatc-ac 631
|||||||||||||||||||||||||||||| ||| |||| |||| || |||||| | ||
Sbjct: 9682 tttccccaatattacatccatttcatcagcaactcttgaagcaatactagttgcagcaac 9623
Query: 632 ttttcgtggttgggagcaaaccacgctttttccatcgtt-gttttaccattccccacaag 690
| | |||||||| | ||||||||||| |||||||||||| || | ||||| | |||||||
Sbjct: 9622 tctacgtggttgtgtgcaaaccacgcattttccatcgttggtgtaaccatcctccacaag 9563
Query: 691 aaactgt-gaagtttggtgggtttttccaaaccccgtttc-ccaccaataatccaaattt 748
|||||| |||||| ||| |||||| ||| |||||||||| ||| ||| |||| ||||||
Sbjct: 9562 gaactgtggaagttgggt-ggttttcccagaccccgtttcaccaacaacaatcaaaattt 9504
Query: 749 tttgtttgccgaaacctatccaaaatt 775
|| |||||||| ||||||||||||
Sbjct: 9503 gatg-ttgccgaatactatccaaaatt 9478
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7386
Number of Sequences: 1807
Number of extensions: 7386
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)