BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC28ZE11RM1.SCF screened BAC_end
         (914 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1741                                                         805   0.0  

>3x_Contig1741 
          Length = 21706

 Score =  805 bits (406), Expect = 0.0
 Identities = 478/498 (95%), Gaps = 3/498 (0%)
 Strand = Plus / Minus

                                                                         
Query: 31    gctttctgggaaagtttggtttcgtacctgataagtgctgattctttattcagtaattca 90
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18972 gctttctgggaaagtttggtttcgtacctgataagtgctgattctttattcagtaattca 18913

                                                                         
Query: 91    ttagaatatttgaaataaataaacgattgcttgtttgtgatcggtatcactaataacttc 150
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18912 ttagaatatttgaaataaataaacgattgcttgtttgtgatcggtatcactaataacttc 18853

                                                                         
Query: 151   acgggatcgttaacgtactgttgtatatttgaactcttgttataagcctttgaatatgct 210
             ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 18852 acgggatcgttaacgtactgttgtatagttgaactcttgttataagcctttgaatatgct 18793

                                                                         
Query: 211   gaaaatgaacgaattttaatcatcaattaattatgcaggttgagaacgggagggagctgt 270
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18792 gaaaatgaacgaattttaatcatcaattaattatgcaggttgagaacgggagggagctgt 18733

                                                                         
Query: 271   tgccagattttcgtttgtggagctgtccgaggtctcccgtgtcacagctgtcagatgttt 330
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18732 tgccagattttcgtttgtggagctgtccgaggtctcccgtgtcacagctgtcagatgttt 18673

                                                                         
Query: 331   tacagaaataaaagattagttggttatcggtgctactgttccatccataagtttaaagtt 390
             |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 18672 tacagaaataaaagattagttgtttatcggtgctactgttccatccataagtttaaagtt 18613

                                                                         
Query: 391   tcggacctttaaaattactacctttaataatataagttgaattcttactatggttgaaat 450
              |||||||||||||||||||| || ||||||| |||| |||| |||||||| ||||||| 
Sbjct: 18612 ccggacctttaaaattactacgttaaataataaaagtcgaatccttactat-gttgaaa- 18555

                                                                         
Query: 451   ttgctatgaaccatgaatgaaattgctgaatagaataaactttaaatttggatgatattt 510
             |||||||||||||||||||||  |||  || |||| ||||| ||||||||||||||| ||
Sbjct: 18554 ttgctatgaaccatgaatgaatatgcaaaaaagaagaaactataaatttggatgata-tt 18496

                               
Query: 511   ttaagcgaacttacacat 528
              |||||||||| ||||||
Sbjct: 18495 ataagcgaactaacacat 18478


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,855
Number of Sequences: 1807
Number of extensions: 10855
Number of successful extensions: 104
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)