BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC28ZE11RM1.SCF screened BAC_end (914 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1741 805 0.0 >3x_Contig1741 Length = 21706 Score = 805 bits (406), Expect = 0.0 Identities = 478/498 (95%), Gaps = 3/498 (0%) Strand = Plus / Minus Query: 31 gctttctgggaaagtttggtttcgtacctgataagtgctgattctttattcagtaattca 90 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18972 gctttctgggaaagtttggtttcgtacctgataagtgctgattctttattcagtaattca 18913 Query: 91 ttagaatatttgaaataaataaacgattgcttgtttgtgatcggtatcactaataacttc 150 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18912 ttagaatatttgaaataaataaacgattgcttgtttgtgatcggtatcactaataacttc 18853 Query: 151 acgggatcgttaacgtactgttgtatatttgaactcttgttataagcctttgaatatgct 210 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 18852 acgggatcgttaacgtactgttgtatagttgaactcttgttataagcctttgaatatgct 18793 Query: 211 gaaaatgaacgaattttaatcatcaattaattatgcaggttgagaacgggagggagctgt 270 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18792 gaaaatgaacgaattttaatcatcaattaattatgcaggttgagaacgggagggagctgt 18733 Query: 271 tgccagattttcgtttgtggagctgtccgaggtctcccgtgtcacagctgtcagatgttt 330 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18732 tgccagattttcgtttgtggagctgtccgaggtctcccgtgtcacagctgtcagatgttt 18673 Query: 331 tacagaaataaaagattagttggttatcggtgctactgttccatccataagtttaaagtt 390 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 18672 tacagaaataaaagattagttgtttatcggtgctactgttccatccataagtttaaagtt 18613 Query: 391 tcggacctttaaaattactacctttaataatataagttgaattcttactatggttgaaat 450 |||||||||||||||||||| || ||||||| |||| |||| |||||||| ||||||| Sbjct: 18612 ccggacctttaaaattactacgttaaataataaaagtcgaatccttactat-gttgaaa- 18555 Query: 451 ttgctatgaaccatgaatgaaattgctgaatagaataaactttaaatttggatgatattt 510 ||||||||||||||||||||| ||| || |||| ||||| ||||||||||||||| || Sbjct: 18554 ttgctatgaaccatgaatgaatatgcaaaaaagaagaaactataaatttggatgata-tt 18496 Query: 511 ttaagcgaacttacacat 528 |||||||||| |||||| Sbjct: 18495 ataagcgaactaacacat 18478 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,855 Number of Sequences: 1807 Number of extensions: 10855 Number of successful extensions: 104 Number of sequences better than 1.0e-20: 1 length of query: 914 length of database: 10,358,551 effective HSP length: 16 effective length of query: 898 effective length of database: 10,329,639 effective search space: 9276015822 effective search space used: 9276015822 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)