BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZE12FM1.SCF screened BAC_end
(989 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1668 392 e-109
>3x_Contig1668
Length = 13429
Score = 392 bits (198), Expect = e-109
Identities = 316/357 (88%)
Strand = Plus / Minus
Query: 95 cattaattatacactttatttagttttatagggaccatttggtatataactgaggttcag 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2328 cattaattatacactttatttagttttatagggaccatttggtatataactgaggttcag 2269
Query: 155 atttagaaatactttttttgtcgatttcatcattcttctttaactcggncncaccttcgt 214
||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||
Sbjct: 2268 atttagaaatactttgaatgtcgatttcatcattcttctttaactcggtctcaccttcga 2209
Query: 215 ttttttttttcnccannagggtatttttagtttcactcttctggtctgatgataatacaa 274
| | |||| ||| |||| | | ||||||||||||||||||||||||||||||||
Sbjct: 2208 catctgctttctccattagggagatatcagtttcactcttctggtctgatgataatacaa 2149
Query: 275 ttctcttagtgatctgtagtttagctaagcgcgagtctatgtcttttatttgttcggcca 334
||||||||||||||||||||| ||||||| |||||| ||||||||||||||||| || ||
Sbjct: 2148 ttctcttagtgatctgtagttcagctaagtgcgagtttatgtcttttatttgtttggtca 2089
Query: 335 gctttaatctttcatttaccaacctttttgttttcttgagataaaattttttttcagcct 394
||||||||||||||||||||||||| | ||| | ||||||||||| || | |||||||||
Sbjct: 2088 gctttaatctttcatttaccaacctctctgtctccttgagataaatttctctttcagcct 2029
Query: 395 ttattggacattccagctgatcaagtttctggaattttaaacccagcttattcaatg 451
| || | ||| ||||||||||||||||||||||| ||| ||||||||| |||||
Sbjct: 2028 tcatggatttttctagctgatcaagtttctggaatttgaaatccagcttatccaatg 1972
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,929
Number of Sequences: 1807
Number of extensions: 17929
Number of successful extensions: 141
Number of sequences better than 1.0e-20: 1
length of query: 989
length of database: 10,358,551
effective HSP length: 16
effective length of query: 973
effective length of database: 10,329,639
effective search space: 10050738747
effective search space used: 10050738747
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)