BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZF01FM1.SCF screened BAC_end
(965 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1332 959 0.0
>3x_Contig1332
Length = 6394
Score = 959 bits (484), Expect = 0.0
Identities = 597/620 (96%), Gaps = 11/620 (1%)
Strand = Plus / Plus
Query: 84 atcctctttttcttcgttgactacagcagccggtgcttcctttacatcaggtaagtcagt 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3376 atcctctttttcttcgttgactacagcagccggtgcttcctttacatcaggtaagtcagt 3435
Query: 144 taatgcagccgaatgtttcaactctagcccattttcgtctgctacttgattcattagttc 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3436 taatgcagccgaatgtttcaactctagcccattttcgtctgctacttgattcattagttc 3495
Query: 204 gtcaactttatcaccatcgactacaactgcatctgcgttcgctcccatatcctcatatac 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3496 gtcaactttatcaccatcgactacaactgcatctgcgttcgctcccatatcctcatatac 3555
Query: 264 gttaacgcttgcgtcaaggtcttcaaattgttgttcaaatttatccataaccattgtgat 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3556 gttaacgcttgcgtcaaggtcttcaaattgttgttcaaatttatccataaccattgtgat 3615
Query: 324 ctgctgcaagttcattgactgaagtgctttgtccatcccgcgacatacttgtgccataga 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3616 ctgctgcaagttcattgactgaagtgctttgtccatcccgcgacatacttgtgccataga 3675
Query: 384 cgttgatacttgtctcatagtgacagcagtttgtactcttgatgcgactgcatctactct 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3676 cgttgatacttgtctcatagtgacagcagtttgtactcttgatgcgactgcatctactct 3735
Query: 444 tgatgccaattttaagagttggactctttcattgcgctttctgatagcattagacgcata 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3736 tgatgccaattttaagagttggactctttcattgcgctttctgatagcattagacgcata 3795
Query: 504 tagtttaccaatctcttcactcttattttataattttcttgagcttattaacccccctgt 563
||||||||||||||||||||||| | ||||| || |||||||||||||||| || |||||
Sbjct: 3796 tagtttaccaatctcttcactctca-tttattatcttcttgagcttattaa-cctcctgt 3853
Query: 564 ttctcctttttgggcagcccttggcagcttggttgtttcaactgcttttgcagtgaattt 623
||||||| ||| ||||| ||||||||||||| ||| ||||||||| ||||||||||| ||
Sbjct: 3854 ttctcctcttt-ggcag-ccttggcagcttgtttg-ttcaactgc-tttgcagtgaa-tt 3908
Query: 624 tcaattggaaataaaagttttttccaagttcatagaaattgcgagaattgatggccgaat 683
|||||| ||||| ||||| || ||||||||||||| |||||||||| |||| |||||||
Sbjct: 3909 tcaatt-gaaat-aaagtattctccaagttcatag-aattgcgagacatgat-gccgaat 3964
Query: 684 tagaaccgacgaataaaatt 703
|||||| ||||||||||||
Sbjct: 3965 tagaacgtacgaataaaatt 3984
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9454
Number of Sequences: 1807
Number of extensions: 9454
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 965
length of database: 10,358,551
effective HSP length: 16
effective length of query: 949
effective length of database: 10,329,639
effective search space: 9802827411
effective search space used: 9802827411
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)