BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZF01RM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1475 1049 0.0
>3x_Contig1475
Length = 10676
Score = 1049 bits (529), Expect = 0.0
Identities = 628/649 (96%), Gaps = 9/649 (1%)
Strand = Plus / Minus
Query: 47 attctttgactttcca-ctaacctatccggtaagttatccatggataagagcttttcatc 105
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2689 attctttgactttccaactaacctatccggtaagttatccatggataagagcttttcatc 2630
Query: 106 attaaagtcagataaagtgaatttcgtaggtccaaattcttttaacatgatatcttcttc 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2629 attaaagtcagataaagtgaatttcgtaggtccaaattcttttaacatgatatcttcttc 2570
Query: 166 atagaagtaatctctggtcggtctatgtagatgttcgaaactgatcgacaaatcattact 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2569 atagaagtaatctctggtcggtctatgtagatgttcgaaactgatcgacaaatcattact 2510
Query: 226 agacagtaactcgtttgtgaggttgaccatagactgacagaaagaagttgatctatgggc 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2509 agacagtaactcgtttgtgaggttgaccatagactgacagaaagaagttgatctatgggc 2450
Query: 286 gaattttagcacatttttatgagattttatccagcacatcattattctagccattgccaa 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2449 gaattttagcacatttttatgagattttatccagcacatcattattctagccattgccaa 2390
Query: 346 atactgaaacatctcgcagtttttaaattccttcataatgactttatcaatgaggtgagt 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2389 atactgaaacatctcgcagtttttaaattccttcataatgactttatcaatgaggtgagt 2330
Query: 406 gaaaaacttgaagataaactctaaaaatttggtttctgattgtata-cttctaatattgc 464
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 2329 gaaaaacttgaagataaactctaaaaatttggtttctgattgtatagcttctaatattgc 2270
Query: 465 tgttgcca-ctgttattgatactgttggcggatccgttcccgttcatcagtgttttatca 523
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2269 tgttgccagctgttattgatactgttggcggatccgttcccgttcatcagtgttttatca 2210
Query: 524 ttaagcattatagttgcagcagatgaaattg-atttgaagaaacacc-ttgatcatttga 581
||| |||| |||||||||||||||||| ||| ||||||||||||||| ||||||||||||
Sbjct: 2209 ttaggcataatagttgcagcagatgaagttgtatttgaagaaacaccattgatcatttga 2150
Query: 582 tac-tgtggaaacttcctatttgaaggatcaaatcttggaaaat-attgaaatggtctt- 638
||| |||||||||| |||||| |||||||||||||||||||||| || |||||| ||||
Sbjct: 2149 tacatgtggaaactacctattagaaggatcaaatcttggaaaatcatagaaatgttctta 2090
Query: 639 atggacctaaattctattcttatcgaaagccaaattttgaaaatgcttc 687
||| |||||| ||||| ||||||||||| |||| ||||||||||||||
Sbjct: 2089 atgtacctaatttcta-tcttatcgaaaagcaaagtttgaaaatgcttc 2042
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,541
Number of Sequences: 1807
Number of extensions: 14541
Number of successful extensions: 122
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)