BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC28ZF02FM1.SCF screened BAC_end (958 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig187 1031 0.0 >3x_Contig187 Length = 1332 Score = 1031 bits (520), Expect = 0.0 Identities = 557/568 (98%), Gaps = 1/568 (0%) Strand = Plus / Minus Query: 85 cggaacatctccaaaaaaaaataacaacaattgccatgggatcttcagaatcctgtaaaa 144 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 581 cggaacaactccaaaaaaaaataacaacaattgccatgggatcttcagaatcctgtaaaa 522 Query: 145 tagctgaagaaacgttgaacgactgtgttgaagttggtggttgggtcttactacagaaca 204 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 521 tagctgaagaaacgttgaacgactgtgttgaagttggtggttgggtcttactacagaaca 462 Query: 205 tccaaatgtccttgtcgtggtgtaatgaaatattgccaaagtacttaaagcagattattt 264 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 461 tccaaatgtccttgacgtggtgtaatgaaatattgccaaagtacttaaagcagattattt 402 Query: 265 ccaatagcaacgaaaacttcaaattgtttatgacttgtagcttacaagatagcatacatc 324 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 401 ccaatagcaacgaaaacttcaaattgtttatgacttgtagcttacaagatagcatacatc 342 Query: 325 caagttctcaacttttacagtatagtacgaagatagcttacgaaggcgaatctggagtat 384 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 341 caagttctcaacttttacagtatagtacgaagatagcttacgaaggcgaatctggagtat 282 Query: 385 tatacaaagtcaaaaaattctgggagctaattattcaaaagaaacccgtcgaaggatcgg 444 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 281 tatacaaagtcaaaaaattctgggagctaattattcaaaagaaacccgtcgaaggaacgg 222 Query: 445 gcttatacttaaaacacttggtctgctggatacactcgttgcttttggagcgcgtgaaaa 504 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 221 gcttatacttaaaacacttggtctgctggatacactcgttgcttttggagcgcgtgaaaa 162 Query: 505 tcactaccaaagacgtcgaataccatgatttatatctggagctagccattaatgcggtgg 564 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 161 tcactaccaaagacgtcgaataccatgatttagatctggagctagccattaatgcggtgg 102 Query: 565 aaaactgtgtcgacagtgagggcattgattggccaaaactaagatttattgttggaaa-g 623 ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| | Sbjct: 101 aaaactgtgtcgacaatgaggcaattgattggccaaaactaagatttattgttggaaagg 42 Query: 624 ctcatatactgcattggattggacaaga 651 ||||||||||||| | | |||||||||| Sbjct: 41 ctcatatactgcaataggttggacaaga 14 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6847 Number of Sequences: 1807 Number of extensions: 6847 Number of successful extensions: 45 Number of sequences better than 1.0e-20: 1 length of query: 958 length of database: 10,358,551 effective HSP length: 16 effective length of query: 942 effective length of database: 10,329,639 effective search space: 9730519938 effective search space used: 9730519938 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)