BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZF02RM1.SCF screened BAC_end
(631 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig439 831 0.0
>3x_Contig439
Length = 1488
Score = 831 bits (419), Expect = 0.0
Identities = 448/455 (98%), Gaps = 2/455 (0%)
Strand = Plus / Minus
Query: 49 ttaggtaaaacaaccaaatcatctctacaaattggaacaatttccacggaaaaagtgaat 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 992 ttaggtaaaacaaccaaatcatctctacaaattggaacaatttccacggaaaaagtgaat 933
Query: 109 ttgtaagtagatgaaccggtatggatatcttgagagattaactcctcggattttttacat 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 932 ttgtaagtagatgaaccggtatggatatcttgagagattaactcctcggattttttacat 873
Query: 169 ttgataggcacgacagcatttaacaaatccaacatcttagcagcatggttcttttgagaa 228
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 872 ttgataggtacgacagcatttaagaaatccaacatcttagcagcatggttcttttgagaa 813
Query: 229 tagaagaaatctaaaccatcctttgcctcactaatggaaatggtgtgaacatgggcattg 288
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 812 tagaagaaatctaaaccatcctttgcctcactaatggaaatggtgtcaacatgggcattg 753
Query: 289 tgcttcaaaatcaactgttctaaatacaagaaagttctcttatgaggaactttttgtcta 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 tgcttcaaaatcaactgttctaaatacaagaaagttctcttatgaggaactttttgtcta 693
Query: 349 atttggacgcttgctctccatgtattagtggtataagatctagcacagtccggacattgc 408
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 atttggacgtttgctctccatgtattagtggtataagatctagcacagtccggacattgc 633
Query: 409 atggcaatcaccacatattccacttcaaatgtttgctggataatagtgctagccatagct 468
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 632 atggcaatcaccacatattccacttcaaatgtttgctggataatagtgttagccatagct 573
Query: 469 tcaccttgaacggtcaatattgaccccggatacgt 503
|||||||||||||||||| |||| |||||||||||
Sbjct: 572 tcaccttgaacggtcaat-ttga-cccggatacgt 540
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4542
Number of Sequences: 1807
Number of extensions: 4542
Number of successful extensions: 108
Number of sequences better than 1.0e-20: 1
length of query: 631
length of database: 10,358,551
effective HSP length: 16
effective length of query: 615
effective length of database: 10,329,639
effective search space: 6352727985
effective search space used: 6352727985
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)