BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC28ZF03FM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig715 1168 0.0
>3x_Contig715
Length = 2727
Score = 1168 bits (589), Expect = 0.0
Identities = 658/673 (97%), Gaps = 6/673 (0%)
Strand = Plus / Plus
Query: 86 ttatggttggctgttcgaaaactcattgtaagggcagcgttatcggtctttgtgataatt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1394 ttatggttggctgttcgaaaactcattgtaagggcagcgttatcggtctttgtgataatt 1453
Query: 146 tcaactcagcacatgttacttcgagaaacgggaacgcgcattaaaaggtcgggtaaccct 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1454 tcaactcagcacatgttacttcgagaaacgggaacgcgcattaaaaggtcgggtaaccct 1513
Query: 206 cagttatgaggccacagctaggtgagttgaaagcagacagcaccattgaacagaagctac 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1514 cagttatgaggccacagctaggtgagttgaaagcagacagcaccattgaacagaagctac 1573
Query: 266 catctccaagctaacattgacattctatagtcaaaaagaagttgctttatgtatgttcct 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1574 catctccaagctaacattgacattctatagtcaaaaagaagttgctttatgtatgttcct 1633
Query: 326 gtatgtacaaatccgtggcaaccacaactttttatgcggtaaagaattaaagtattatga 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1634 gtatgtacaaatccgtggcaaccacaactttttatgcggtaaagaattaaagtattatga 1693
Query: 386 tattagaaattaatgttactatgtgaaataaatgttgttagagaggagcttgctctgtga 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1694 tattagaaattaatgttactatgtgaaataaatgttgttagagaggagcttgctctgtga 1753
Query: 446 gtgaacgataactatagatagtccgttttatagatccagtctgctccaattagatctgct 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1754 gtgaacgataactatagatagtccgttttatagatccagtctgctccaattagatctgct 1813
Query: 506 ccttgatcctttgcgagtctgaaccatttagctgctcgtcttaaatctttttttctattt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1814 ccttgatcctttgcgagtctgaaccatttagctgctcgtcttaaatcttttttcctattt 1873
Query: 566 ggagtcgtctttgaccaaatggtaccgcat-aacacatagaatcaacgtgtccc-acgat 623
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 1874 ggagtcgtctttgaccaaatggtaccgcataaacacatagaatcaacgtgtcccaacgat 1933
Query: 624 gctgcatattcc-aacatttcagaccctttcattcatgagcagtgacaccgtatcccttc 682
|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1934 gctgcatattccaaacatttcagacccttccattcatgagcagtgacaccgtatcccttc 1993
Query: 683 at-ttagcttta-cacattcgtacagagcgggggcagttgcttcattttgtagaaaatgg 740
|| | |||| || |||||||||||||||||||||||| ||| ||||| ||||| | ||||
Sbjct: 1994 atataagctataccacattcgtacagagcgggggcagctgcgtcattctgtag-agatgg 2052
Query: 741 aagcggttaacgt 753
|||||||| ||||
Sbjct: 2053 aagcggttcacgt 2065
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7038
Number of Sequences: 1807
Number of extensions: 7038
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)