BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC28ZF05FM1.SCF screened BAC_end
         (929 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1613                                                        1172   0.0  

>3x_Contig1613 
          Length = 13977

 Score = 1172 bits (591), Expect = 0.0
 Identities = 609/614 (99%), Gaps = 1/614 (0%)
 Strand = Plus / Minus

                                                                        
Query: 87   tacaaaggatcggtaggcacgctgatgctgagtctgtgaggcagactttgttgacgactg 146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3036 tacaaaggatcggtaggcacgctgatgctgagtctgtgaggcagactttgttgacgactg 2977

                                                                        
Query: 147  ctccagctggaagtattcctcctgccgtggcttcatctggtgcttcttccgctgcatcgg 206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2976 ctccagctggaagtattcctcctgccgtggcttcatctggtgcttcttccgctgcatcgg 2917

                                                                        
Query: 207  ctaacggtgctgctgcccaagttactggaggtgtttcatctggttattctggcatctata 266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2916 ctaacggtgctgctgcccaagttactggaggtgtttcatctggttattctggcatctata 2857

                                                                        
Query: 267  atccgtacatgggatccaaaaaggaacctctacatgttgttgtcactgaatccacattct 326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2856 atccgtacatgggatccaaaaaggaacctctacatgttgttgtcactgaatccacattct 2797

                                                                        
Query: 327  ctattgtttccagatggttaaaatggttgatcgtatttggtgcagttacatacggtttga 386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2796 ctattgtttccagatggttaaaatggttgatcgtatttggtgcagttacatacggtttga 2737

                                                                        
Query: 387  ctgaaggtttcaaatacattacagaacattcaaccctcttcaagacaaatgaagtcgccg 446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2736 ctgaaggtttcaaatacattacagaacattcaaccctcttcaagacaaatgaagtcgccg 2677

                                                                        
Query: 447  ataaatctgtggatgttgcaaagactaatgtaagatttgatgacgtgcggngttgtgacg 506
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 2676 ataaatctgtggatgttgcaaagactaatgtaagatttgatgacgtgcggggttgtgacg 2617

                                                                        
Query: 507  aagctagagctgaattggaggaaattgtcgatttcttaaaagatcctaccaaatacgaat 566
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2616 aagctagagctgaattggaggaaattgtcgatttcttaaaagatcctaccaaatacgaat 2557

                                                                        
Query: 567  ccttgggtggtaagttacctaaaggtgttctattgaccggaccttcaggtactggtaaga 626
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2556 ccttgggtggtaagttacctaaaggtgttctattgaccggacctccaggtactggtaaga 2497

                                                                        
Query: 627  ctttattggcaagagccaccggcggtgaagctggtgttgacttttttttcatgt-agggt 685
            ||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||
Sbjct: 2496 ctttattggcaagagccaccgccggtgaagctggtgttgactttttcttcatgtcagggt 2437

                          
Query: 686  cagagtttgacgaa 699
            ||||||||||||||
Sbjct: 2436 cagagtttgacgaa 2423


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7329
Number of Sequences: 1807
Number of extensions: 7329
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)